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Correct wetland bottle-volume and inferred medium-requirement metadata #1920

Description

@realmarcin

Finding

CommunityMech:000255 cultivation_setup.working_volume=160mL copies bottle capacity; the methods load40g wet soil slurry into160mL bottles, not160mL culture. Remove unsupported working volume or derive only from explicit source measurement. Related-ingredient lactate text asserts a required primary carbon source from a fitted reaction, and H2S text extrapolates accumulation/trapping needs; source microcosms were soil slurries, not a validated formulated lactate medium. Related sulfate/oxygen evidence is markedIN_VIVO despite laboratorymicrocosms. Preserve stated incubation/air-dosing details; this is distinct from closed644 for the coastal community.

Evidence And Limits

https://pmc.ncbi.nlm.nih.gov/articles/PMC11222425/

Whole canonical records and all graph snippets read after a complete two-root baseline. Fresh primary abstracts and Crossref identities checked. Watermelon/wetland main-body XML, methods, results, discussion and captions read; no figure-pixel, supplementary-file, model-code or raw-data audit. Viili/sludge changes are abstract-bounded; bounded DOI/publisher searches did not yield an inspected open full text. No access bypass or cache imports.

Fresh all-state issue titles/bodies searched; matching1014/1015/1452/644 read and distinct. Hidden/ignored-inclusive local searches exclude.git,docs,site,reference caches,.env; not an exhaustive historical PR-comment search.

Lifecycle

Separate non-graph follow-up; remain open until independently verified. Self-adversarial review is not independent approval.

Activity

  1. realmarcin commented on Oct 8, 2026

    @realmarcin
    ContributorAuthor

    Research or non-graph follow-up remains open. #1921 at 97c4851; self-review #1921 (review). 1101 passed in 379.68s (0:06:19); postcommit docs-current passed. Four append-only histories, 41 validation outputs and ten mutation probes recorded. No new topology or Edison invocation in this batch; prior research extensions remain incomplete. Self-review is not independent approval.

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