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Separate teosinte formulation workflow and soil associations from ecological mechanisms #1924

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Description

@realmarcin

Finding

CommunityMech:000100 has selection/formulation and equal-volume mixing as COLONIZATION_FACILITATION nodes. Remove these workflow-only nodes, retaining their existing design/media evidence. Keep reported field treatment effects and both application-to-response arrows, without attributing them to measured nitrogen-fixation flux or individual inoculant establishment. Relative-abundance enrichment is not an absolute growth measurement. Bacillus centrality and correlated guild abundance do not prove mutualism, nutrient exchange or keystone necessity. Soil communities are not the seven-strain inoculum.

Evidence And Limits

https://pmc.ncbi.nlm.nih.gov/articles/PMC12015678/

Whole canonical records and all five primary main-body XML texts read, including methods, results, discussions, table text and captions. No original figure-pixel, separate supplement, raw-data or analysis-code audit. Reusable-taxon ID search and local issue searches included hidden/ignored files, excluding credentials and unrelated generated/cache content in the issue search. All-state issue titles/bodies checked; not all historical PR comments.

Lifecycle

Address in batch119; close only after protected-main merge. Self-adversarial review is not independent approval.

Activity

  1. realmarcin commented on Oct 8, 2026

    @realmarcin
    ContributorAuthor

    Graph repair addressed; close only after protected-main merge. #1930 at 0c53674; self-review #1930 (review). 1116 passed in 319.85s (0:05:19); postcommit docs-current passed. Four append-only histories, 41 validation outputs and twelve mutation probes recorded. No new topology or Edison invocation in this batch; prior research extensions remain incomplete. Self-review is not independent approval.

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