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Separate mCAFEs enrichment selection from inferred growth and network mechanisms #1925

Description

@realmarcin

Finding

CommunityMech:000078 represents a collection of RCC, not one ten-member consortium. Carbon/interval selection effects and five-stock revival are experimental; neither establishes reduced competition through NICHE_PARTITIONING. Fast/slow labels use relative abundance at 3/7-day transfers, not directly measured per-ASV growth rates. NetCoMi Pearson-correlation hubs are computational candidates, not experimentally necessary taxa or validated PGP function. The listed network hubs cannot be credited as the complete set of growth-classified ASVs. Retain the two experimentally grounded selection arrows and bounded five-stock revival, without inferring that one genus causes stability or that all enrichments revive.

Evidence And Limits

https://pmc.ncbi.nlm.nih.gov/articles/PMC11153752/

Whole canonical records and all five primary main-body XML texts read, including methods, results, discussions, table text and captions. No original figure-pixel, separate supplement, raw-data or analysis-code audit. Reusable-taxon ID search and local issue searches included hidden/ignored files, excluding credentials and unrelated generated/cache content in the issue search. All-state issue titles/bodies checked; not all historical PR comments.

Lifecycle

Address in batch119; close only after protected-main merge. Self-adversarial review is not independent approval.

Activity

  1. realmarcin commented on Oct 8, 2026

    @realmarcin
    ContributorAuthor

    Graph repair addressed; close only after protected-main merge. #1930 at 0c53674; self-review #1930 (review). 1116 passed in 319.85s (0:05:19); postcommit docs-current passed. Four append-only histories, 41 validation outputs and twelve mutation probes recorded. No new topology or Edison invocation in this batch; prior research extensions remain incomplete. Self-review is not independent approval.

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