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Resolve the three tobacco SynCom strains and non-graph assay boundaries #1937

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Description

@realmarcin

Finding

The primary Results identify Y364 as Pseudomonas nicosulfuronedens, Y832 as P. citronellolis, and Y878 as Bacillus altitudinis; current taxonomy merges them into two broad rows and assigns CROSS_FEEDER from a composition-only snippet. Resolve exact canonical identities and strain rows with authoritative taxonomy, preserving source names. Separate healthy-plant isolate origin, resource-library selection, fertilizer production and field co-treatment. The source Methods describe tomato-exudate resource-library compounds and figure captions say tomato despite a tobacco field experiment; Results/Discussion differ on Y832 resource counts. Do not silently resolve these inconsistencies or claim tested root migration from cheA PCR alone.

Evidence And Limits

https://pmc.ncbi.nlm.nih.gov/articles/PMC12267373/

Four whole canonical records reviewed. All four fresh primary abstracts and Crossref identities checked; biomethanation and tobacco complete main-body XML texts read, including methods/results/discussion and captions/table text. Arsenic and compost changes are abstract-bounded: no PMC full text exposed and publisher opens returned403; this is not exhaustive full-text absence. No original figure pixels,separate supplements,raw data or analysis code audited. No publication body import or new optimization protocol. Local searches include hidden/ignored files with credentials excluded; all-state issue titles/bodies checked.

Lifecycle

Separate non-graph follow-up; remain open until separately verified. Source-based self-adversarial review is not independent approval.

Activity

  1. realmarcin commented on Oct 8, 2026

    @realmarcin
    ContributorAuthor

    Research or non-graph follow-up remains open. #1938 at 5afca28; self-review #1938 (review). 1131 passed in 305.98s (0:05:05); postcommit docs-current passed. Four append-only histories, 41 validation outputs and twelve mutation probes recorded. No new topology or Edison invocation in this batch; prior research extensions remain incomplete. Self-review is not independent approval.

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