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Separate Yarrowia lipid fraction from titer and hydrolysis from exclusive niches #1964
Description
Finding
CommunityMech:000354: Yarrowia_lipolytica_Division_of_Labor_Lipid_Consortium
The full preprint identifies YBGL3/YBXT-XR, shared glucose use, inoculum-dependent lipid output and comparable best-consortium/monoculture titer. Repair the existing graph without claiming polymer depolymerization, uniform performance improvement, simultaneous glucose/xylose consumption or demonstrated burden relief. Retain the higher lipid fraction and temporal succession; qualify mediation. Do not restore #819 cross-feeder roles.
Sources
https://doi.org/10.64898/2025.12.19.695487
Scope
Six whole records and all 15 existing nodes/eight arrows inspected. Primary abstracts and relevant full-text sections checked; TCP and urease repairs are abstract-bounded. All-state issue search covered 1196 issues and hidden/ignored local paths; nine prior matching issue bodies read. This is not an audit of every historical PR comment.
Resolution
Address the existing graph in batch124; close only after protected-main merge. Source-based self-adversarial review is not independent approval.
Activity
realmarcin commentedon Oct 8, 2026
Graph repair addressed; close only after protected-main merge. #1972 at f16d4d8; self-review #1972 (review). 1187 passed in 353.41s (0:05:53); postcommit docs-current passed. Six append-only histories, 61 validation outputs and twelve mutation probes recorded. No new topology or Edison provider submission in this batch; one dryrun only; prior research extensions remain incomplete. Self-review is not independent approval.