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Re-evidence hCom2 resistance and remove colonization-facilitation misclassification #1967
Description
Finding
CommunityMech:000123: hCom2_Complex_Gut_Microbiome
All three nodes are typed COLONIZATION_FACILITATION and the two outcomes cite only the assembly step. Attach outcome-specific abstract evidence, remove the misleading facilitation labels, preserve donor-dependent fecal resilience and qualify niche-occupancy mediation. Phylum dropout does not identify a necessary individual protective strain. Keep restricted full bodies out of repository caches and leave existing non-graph debt under #765.
Sources
https://doi.org/10.1016/j.cell.2022.08.003
Scope
Six whole records and all 15 existing nodes/eight arrows inspected. Primary abstracts and relevant full-text sections checked; TCP and urease repairs are abstract-bounded. All-state issue search covered 1196 issues and hidden/ignored local paths; nine prior matching issue bodies read. This is not an audit of every historical PR comment.
Resolution
Address the existing graph in batch124; close only after protected-main merge. Source-based self-adversarial review is not independent approval.
Activity
realmarcin commentedon Oct 8, 2026
Graph repair addressed; close only after protected-main merge. #1972 at f16d4d8; self-review #1972 (review). 1187 passed in 353.41s (0:05:53); postcommit docs-current passed. Six append-only histories, 61 validation outputs and twelve mutation probes recorded. No new topology or Edison provider submission in this batch; one dryrun only; prior research extensions remain incomplete. Self-review is not independent approval.