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Reconcile Yarrowia member labels and inoculum-dependent abundance metadata #1970
Description
Finding
CommunityMech:000354: Yarrowia_lipolytica_Division_of_Labor_Lipid_Consortium
The tested consortium uses YBGL3 plus YBXT-XR, while canonical taxonomy includes YBGL3 or YBGL1 and fixed COMMON labels. Reconcile membership, condition-specific abundance and medium details using version-1 Methods/Results. Resolve their apparent inoculum-ratio ordering inconsistency instead of silently choosing numbers. Preserve #819 removal of unsupported cross-feeder roles.
Sources
https://doi.org/10.64898/2025.12.19.695487
Scope
Six whole records and all 15 existing nodes/eight arrows inspected. Primary abstracts and relevant full-text sections checked; TCP and urease repairs are abstract-bounded. All-state issue search covered 1196 issues and hidden/ignored local paths; nine prior matching issue bodies read. This is not an audit of every historical PR comment.
Resolution
Open follow-up; documentation in batch124 does not close this work. Source-based self-adversarial review is not independent approval.
Activity
realmarcin commentedon Oct 8, 2026
Research or non-graph follow-up remains open. #1972 at f16d4d8; self-review #1972 (review). 1187 passed in 353.41s (0:05:53); postcommit docs-current passed. Six append-only histories, 61 validation outputs and twelve mutation probes recorded. No new topology or Edison provider submission in this batch; one dryrun only; prior research extensions remain incomplete. Self-review is not independent approval.