Support ICC computational clearing mode for CLEM datasets

[tieneupin]

We were informed of the existence of another computational clearing (CC) mode offered by the CLEM.

This PR updates the workflow so that this CC mode is also supported. Slight improvements were made to the code to handle type hinting centrally via TypeAlias objects instead of manually typing out the identical, long types each time.

Instead of looking for the presence of a string pattern associated with the CC mode in the series name, the logic was adjusted so that this string pattern is only valid if found at the end of the series name.

Additionally, we switch from using the term 'denoising' to 'computational clearing'/'cc', as that is a more technically accurate indicator of the processing step's purpose. It does not subtract or remove noise, but rather identifies and subtracts out-of-focus background fluorescence from fluorescent images.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 52.95%. Comparing base (95769c0) to head (cb74925).

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #823      +/-   ##
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+ Coverage   52.90%   52.95%   +0.04%     
==========================================
  Files          99       99              
  Lines       10760    10771      +11     
  Branches     1415     1418       +3     
==========================================
+ Hits         5693     5704      +11     
  Misses       4769     4769              
  Partials      298      298              

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[stephen-riggs]

Looks good to me, I like the change to be more generic so that denoising modes and colours can be added in a single place if needed