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EBISPOT

EMBL-EBI Samples, Phenotypes, and Ontologies Team

64 followers
https://www.ebi.ac.uk/spot/

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efo efo Public

Github repo for the Experimental Factor Ontology (EFO)

Python 63 15
DUO DUO Public

Ontology for consent codes and data use requirements

Makefile 69 17
CMPO CMPO Public

Cellular Microscopy Phenotype Ontology

Python 6 2
ols4 ols4 Public

The EMBL-EBI Ontology Lookup Service (OLS)

Java 94 43

Repositories

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All CSS Dockerfile HTML Java JavaScript Jinja Jupyter Notebook Makefile Python Ruby Rust Shell TeX TypeScript Web Ontology Language

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Showing 10 of 85 repositories

owlmake Public

EBISPOT/owlmake’s past year of commit activity

Rust 1 Apache-2.0 0 0 0 Updated Jun 27, 2026
oxo2 Public
A SSSOM compliant implementation of OxO that is backwards compatible with OxO version 1

EBISPOT/oxo2’s past year of commit activity

Java 1 Apache-2.0 0 0 12 Updated Jun 26, 2026
ols4 Public
The EMBL-EBI Ontology Lookup Service (OLS)

EBISPOT/ols4’s past year of commit activity

Java 94 Apache-2.0 43 92 (1 issue needs help) 12 Updated Jun 26, 2026
efo Public
Github repo for the Experimental Factor Ontology (EFO)

EBISPOT/efo’s past year of commit activity

Python 63 15 192 (2 issues need help) 11 Updated Jun 26, 2026
gwas-summary-statistics-standard Public
Documentation on new GWAS Summary Statistics Standard

EBISPOT/gwas-summary-statistics-standard’s past year of commit activity

TeX 25 2 15 0 Updated Jun 26, 2026
GrEBI Public
HPC aggregation pipeline and API/MCP server for LLM-mediated biomedical data integration

EBISPOT/GrEBI’s past year of commit activity

Jupyter Notebook 4 Apache-2.0 4 17 1 Updated Jun 26, 2026
goci-rest Public

EBISPOT/goci-rest’s past year of commit activity

Java 0 Apache-2.0 0 13 6 Updated Jun 25, 2026
gwas-sumstats-harmoniser Public
GWAS Summary Statistics Data Harmonisation

EBISPOT/gwas-sumstats-harmoniser’s past year of commit activity

Python 29 21 16 11 Updated Jun 24, 2026
whelk-rs Public Forked from INCATools/whelk-rs
Whelk is an OWL EL reasoner

EBISPOT/whelk-rs’s past year of commit activity

Rust 0 MIT 8 0 0 Updated Jun 23, 2026
hermit-rs Public Forked from phillord/hermit-reasoner

EBISPOT/hermit-rs’s past year of commit activity

Rust 1 26 0 0 Updated Jun 23, 2026

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