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WS-ART-001-03B2: verify and classify guide materialization - #223

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Jul 29, 2026
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WS-ART-001-03B2: verify and classify guide materialization#223
abiorh-claw merged 3 commits into
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codex/ws-art-001-03b2-guide-materialization-classification

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@Abiorh001 Abiorh001 commented Jul 29, 2026

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Workstream PR Trust Bundle

Chunk

WS-ART-001-03B2 — Guide Materialization And Classification (L1)

Goal

Read exact verified guide-source bytes through the fixed guide-reader boundary,
recompute their identity in bounded private scratch, and persist only immutable
syntactic classification or bounded ART incident evidence.

Intent And Planning Context

  • Intent: Project Manager guide items may use the approved document, table,
    text, JSON, or image formats; they are not contributor submission ZIPs.
  • Chunk contract: .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/chunks/WS-ART-001-03B2-guide-materialization-classification.md

What Changed

  • Added exact fixed-reader materialization with pre/post lineage validation.
  • Added provider-neutral streaming, complete rehash/size verification, and typed
    bounded scratch inspection.
  • Added deterministic format classification, immutable evidence, bounded
    incidents, migration 0040, tests, documentation, and review evidence.

Why It Changed

Workstream must prove the exact verified guide bytes before later extraction or
sufficiency processing; object-store presence or caller metadata is insufficient.

Design Chosen

Transaction A locks exact lineage and consumes prepared authority before the
provider read. The canonical store streams into canonical scratch. Transaction B
relocks the same facts before persisting one immutable result.

Alternatives Rejected

  • Direct S3/MinIO reads, arbitrary temp files, generic download authority,
    serialized prepared handles, caller excerpts, and parsing during upload.

Scope Control

Allowed Files Changed

  • ART interfaces, models, migration, materialization/classification services,
    focused tests, ART specification, and this chunk's evidence.

Files Outside Stated Scope

  • None.

Product Behavior

  • Product behavior changed and is explained here: hidden fixed-service guide
    materialization/classification exists, but artifact.guide_source.read
    remains planned and unavailable until AUTH-04B.

Evidence

Commands Run

uv run --no-sync ruff check app tests scripts alembic/versions/0040_guide_materialization.py
uv run --no-sync pytest -q tests/test_guide_formats.py tests/test_artifact_preparation.py
WORKSTREAM_TEST_ADMIN_DATABASE_URL=<local-admin> uv run --no-sync python scripts/run_isolated_tests.py <focused materialization tests>
python3 scripts/check_stale_artifact_contracts.py
python3 scripts/check_markdown_links.py
PYTHONPATH=. python3 scripts/test_lightweight_agent_gates.py
git diff --check

Result Summary

Focused guide/preparation tests: 35 passed
Database-backed materialization selection: 13 passed before review repair
Immutable-conflict database proof: 1 passed after repair
Backend exact head 1381d371: passed in 12m47s
Agent Gates exact head 1381d371: passed in 19s
CodeRabbit final-head review: completed; two evidence-wording findings repaired

Acceptance Criteria Proof

  • Exact verified lineage and active namespace are checked before provider I/O.
  • Complete digest and byte count are recomputed on every read.
  • Stale/replaced/missing/mismatched content fails closed with bounded evidence.
  • Classification is syntactic, bounded, immutable, and provider-neutral.
  • Live AUTH actions remain planned and unavailable.

Test Delta

Tests Added

  • Format signatures, OOXML/container safety, exact limits, image variants,
    typed inspection, materialization lineage, incidents, replay, cancellation,
    timeout, conflict, migration, and architecture fences.

Tests Modified

  • Alembic head/fingerprint, artifact architecture, preparation, and guide-binding
    integration coverage.

Tests Removed Or Skipped

  • None.

Internal Reviewer Results

Reviewed code SHA: 1381d371

Reviewed at: 2026-07-29

Reviewer run IDs: recorded in the paired internal-review evidence.

Reviewer Result Blocking Findings Notes
Senior engineering PASS WITH LOW RISKS None Repair delta also passed
QA/test PASS WITH LOW RISKS None Repair delta also passed
Security/auth PASS None Repair delta also passed
Product/ops PASS None Exact custody preserved
Architecture PASS WITH LOW RISKS None Canonical facade/store/scratch reused
CI integrity PASS WITH LOW RISKS None No gate weakening
Docs PASS None Specification and evidence aligned
Reuse/dedup PASS WITH LOW RISKS None No parallel boundary introduced
Test delta PASS WITH LOW RISKS None No removed or weakened tests

External Review

Source Status Notes
CodeRabbit PASS AFTER FIXES Six initial findings and two final evidence findings repaired
GitHub checks PASS Backend and Agent Gates green on 1381d371

CI And Gate Integrity

  • No workflow weakening.
  • No lint/test/docstring gate weakening.
  • No coverage threshold weakening.
  • No package script weakening.
  • No unpinned new GitHub Action.
  • Checkout credential persistence unchanged.

Remaining Risks

Classification is syntactic by design. Semantic extraction belongs to 03B3A;
live fixed-reader authorization belongs to AUTH-04B.

Follow-Up Work

03B3A adds extraction, 03B3B adds durable continuation, 03B4 finalizes the
hidden manifest, AUTH-04B activates exact fixed-service actions, and 03C later
performs the separate legacy cutover.

Human Review Focus

Please inspect active namespace fencing, pre/post generation locks, complete
rehash comparison, nested-archive bounds, incident privacy, and deny-only AUTH.

Human Merge Ownership

  • I can explain what changed.
  • I can explain why it changed.
  • I know what could break.
  • I accept the remaining risks.
  • The user explicitly approved this specific PR for merge.

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Review details
⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro Plus

Run ID: f3b1aacd-b2eb-4f15-ba9d-cdaf46449990

📥 Commits

Reviewing files that changed from the base of the PR and between 1381d37 and 294d453.

📒 Files selected for processing (2)
  • .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/reviews/WS-ART-001-03B2-external-review-response.md
  • .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/reviews/WS-ART-001-03B2-pr-trust-bundle.md
📝 Walkthrough

Walkthrough

Adds hidden guide-source materialization with exact lineage authorization, bounded scratch inspection, deterministic format classification, immutable classification/incident storage, migration safeguards, and focused architecture and database-backed tests.

Changes

Guide materialization and classification

Layer / File(s) Summary
Materialization contracts and evidence schema
backend/app/interfaces/artifact_operations.py, backend/app/modules/artifacts/models.py, backend/app/modules/artifacts/schemas.py, backend/alembic/versions/0040_guide_materialization.py
Adds materialization request/result contracts, authority facts, immutable classification and incident models, exact-binding constraints, and migration 0040_guide_materialization with populated-downgrade refusal.
Bounded artifact inspection and format detection
backend/app/modules/artifacts/sources.py, backend/app/modules/artifacts/preparation.py, backend/app/modules/artifacts/guide_formats.py, backend/tests/test_artifact_preparation.py, backend/tests/test_guide_formats.py
Adds typed scratch inspection and bounded detection for text, PDFs, images, OOXML archives, nested ZIPs, unsafe containers, and unsupported media.
Fixed-reader materialization flow
backend/app/modules/artifacts/guide_materialization.py, backend/app/modules/artifacts/service.py, backend/tests/test_guide_bindings.py, backend/tests/test_artifact_architecture.py
Loads and authorizes verified lineage, validates namespace identity, recomputes digest and size, records bounded incidents, revalidates lineage, and persists or replays classifications.
Verification, architecture, and review evidence
backend/tests/test_alembic.py, backend/tests/conftest.py, backend/scripts/run_test_lanes.py, docs/spec_artifact_storage_service.md, .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/...
Updates schema fingerprints, test lanes, migration expectations, specifications, acceptance commands, and internal/external review evidence.

Estimated code review effort: 4 (Complex) | ~60 minutes

Sequence Diagram(s)

sequenceDiagram
  participant Client
  participant ArtifactMaterializationService
  participant ArtifactPreparationService
  participant GuideFormatDetector
  participant Database
  Client->>ArtifactMaterializationService: materialize_guide_source(request)
  ArtifactMaterializationService->>Database: load and lock verified lineage
  ArtifactMaterializationService->>ArtifactPreparationService: prepare and verify source
  ArtifactPreparationService->>GuideFormatDetector: inspect bounded scratch reader
  GuideFormatDetector-->>ArtifactMaterializationService: classification result
  ArtifactMaterializationService->>Database: revalidate and persist classification or incident
  Database-->>Client: materialization result
Loading

Possibly related PRs

Suggested reviewers: abiorh-claw

🚥 Pre-merge checks | ✅ 4 | ❌ 1

❌ Failed checks (1 warning)

Check name Status Explanation Resolution
Docstring Coverage ⚠️ Warning Docstring coverage is 26.27% which is insufficient. The required threshold is 80.00%. Write docstrings for the functions missing them to satisfy the coverage threshold.
✅ Passed checks (4 passed)
Check name Status Explanation
Linked Issues check ✅ Passed Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check ✅ Passed Check skipped because no linked issues were found for this pull request.
Title check ✅ Passed The title is concise and accurately reflects the main change: guide materialization verification and classification.
Description check ✅ Passed The description matches the template well and covers the required sections, evidence, tests, risks, and reviewer results.
✨ Finishing Touches 💡 1
📝 Generate docstrings 💡
  • Create stacked PR
  • Commit on current branch
🧪 Generate unit tests (beta)
  • Create PR with unit tests
  • Commit unit tests in branch codex/ws-art-001-03b2-guide-materialization-classification

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🧹 Nitpick comments (6)
backend/alembic/versions/0040_guide_materialization_classification.py (1)

1-14: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Filename doesn't match the embedded revision id.

The file is named 0040_guide_materialization_classification.py, but revision = "0040_guide_materialization" (no _classification suffix). This matches down_revision chains, test_alembic.py's 8 revision assertions, and docs/spec_artifact_storage_service.md's reference to `0040_guide_materialization`, but not the filename itself or the chunk contract's `0040_guide_materialization_classification` reference. The prior migration 0039_guide_source_bindings.py keeps filename and revision id aligned; this one doesn't, which will confuse anyone trying to locate the migration by its documented/DB-recorded name. Alembic itself doesn't require filename/revision parity (it reads the revision variable), so this won't break upgrades/downgrades, but it's worth aligning one way or the other.

♻️ Align filename with the embedded revision id
-backend/alembic/versions/0040_guide_materialization_classification.py
+backend/alembic/versions/0040_guide_materialization.py
🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@backend/alembic/versions/0040_guide_materialization_classification.py` around
lines 1 - 14, Align the migration filename with the embedded revision identifier
by renaming it to match revision = "0040_guide_materialization", preserving the
existing revision chain and migration contents.
backend/app/interfaces/artifact_operations.py (1)

270-284: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Update ArtifactMaterializationPort docstring — no longer "only two" forms.

The docstring """Materialize only the two canonical immutable source forms.""" (line 271, unchanged) predates this diff, but this diff adds a third method, materialize_guide_source (279-284), to the same port. The docstring now understates the port's actual surface, which is misleading precisely for a PR whose stated goal is enforcing "the canonical materialization boundary."

✏️ Update the stale docstring
 class ArtifactMaterializationPort(Protocol):
-    """Materialize only the two canonical immutable source forms."""
+    """Materialize only the canonical immutable source forms."""
🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@backend/app/interfaces/artifact_operations.py` around lines 270 - 284, Update
the ArtifactMaterializationPort class docstring to remove the stale claim that
it materializes only two source forms, and replace it with wording that
accurately describes the broader canonical materialization boundary including
materialize_prepared_bundle and materialize_guide_source.
backend/tests/test_guide_bindings.py (1)

464-511: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Replay conflict branch is uncovered.

The suite covers first classification and identical replay, but not the "guide classification conflicts" branch (an existing classification whose stored facts diverge from the freshly detected ones). Given that branch is the immutability guarantee for persisted evidence, a focused test (e.g. mutate detected_format or classification_facts of the persisted row, then re-materialize) would lock it in.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@backend/tests/test_guide_bindings.py` around lines 464 - 511, Add a focused
test alongside
test_materialization_verifies_classifies_replays_and_cleans_scratch that
performs an initial materialization, mutates the persisted
GuideSourceFormatClassification detected_format or classification_facts, then
re-materializes the same request and asserts the “guide classification
conflicts” branch raises the expected error while preserving the stored
evidence.
backend/app/modules/artifacts/guide_formats.py (2)

309-340: 🎯 Functional Correctness | 🔵 Trivial | 💤 Low value

JPEG scan assumes every marker carries a length field.

Standalone markers (0xD8, 0xD9, 0xD00xD7, 0x01) have no length, so offset += 2 + length misinterprets the following bytes as a segment length. The failure mode is benign here (loop terminates and None is returned, falling through to the declared/text path), but skipping the length read for standalone markers makes detection deterministic for such files.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@backend/app/modules/artifacts/guide_formats.py` around lines 309 - 340, The
JPEG parsing logic in the format-detection function should handle standalone
markers before reading a segment length. In the marker loop, recognize 0xD8,
0xD9, 0xD0–0xD7, and 0x01, advance past their marker bytes without interpreting
following bytes as a length, and preserve the existing length-based handling for
markers that carry segment lengths.

248-255: 🚀 Performance & Scalability | 🔵 Trivial | ⚡ Quick win

Nested archive members are fully buffered in memory.

archive.read(info) materializes each nested .zip member (up to the accumulated maximum_decompressed_bytes budget of 128 MiB) into a BytesIO, and recursion can hold several such buffers alive simultaneously up to maximum_nesting_depth. Consider adding a per-entry byte ceiling for nested archives (e.g. reject info.file_size above a small nested limit) so peak memory is bounded independently of the aggregate budget.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@backend/app/modules/artifacts/guide_formats.py` around lines 248 - 255,
Update the nested archive handling in _inspect_archive to enforce a per-entry
size limit before calling archive.read(info) for .zip members. Skip or reject
nested members whose info.file_size exceeds the defined nested-archive ceiling,
while preserving recursion for entries within the limit and the existing
aggregate decompression budget.
backend/app/modules/artifacts/sources.py (1)

14-21: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

_InspectionResult is invariant but only appears in a return position.

mypy enforces protocol variance: a type variable used solely as a protocol method's return type must be declared covariant, otherwise it reports “Invariant type variable "_InspectionResult" used in protocol where covariant one is expected”. Declaring a dedicated covariant variable avoids the error and keeps the protocol assignable for subtypes.

♻️ Proposed covariant protocol type variable
-_InspectionResult = TypeVar("_InspectionResult")
+_InspectionResult = TypeVar("_InspectionResult")
+_InspectionResultCo = TypeVar("_InspectionResultCo", covariant=True)
 
 
-class PreparedArtifactInspector(Protocol[_InspectionResult]):
+class PreparedArtifactInspector(Protocol[_InspectionResultCo]):
     """Typed artifact-owned inspection capability over one scratch reader."""
 
-    def inspect(self, reader: BinaryIO) -> _InspectionResult:
+    def inspect(self, reader: BinaryIO) -> _InspectionResultCo:
         """Return bounded structural facts without retaining the reader."""
#!/bin/bash
# Confirm the project's type-check configuration and whether protocol variance is enforced.
fd -H -t f -e toml -e cfg -e ini . -d 2 --exec grep -lniE 'mypy|pyright' {} \;
fd -H -t f -e toml -e cfg -e ini . -d 2 --exec sed -n '1,200p' {} \; | grep -niE -A6 '\[(tool\.)?(mypy|pyright)'
rg -n 'PreparedArtifactInspector' backend | head -50
🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@backend/app/modules/artifacts/sources.py` around lines 14 - 21, Declare a
dedicated covariant type variable for the return-only result type and use it in
PreparedArtifactInspector instead of the invariant _InspectionResult. Leave the
inspect method signature and reader behavior unchanged.
🤖 Prompt for all review comments with AI agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

Nitpick comments:
In `@backend/alembic/versions/0040_guide_materialization_classification.py`:
- Around line 1-14: Align the migration filename with the embedded revision
identifier by renaming it to match revision = "0040_guide_materialization",
preserving the existing revision chain and migration contents.

In `@backend/app/interfaces/artifact_operations.py`:
- Around line 270-284: Update the ArtifactMaterializationPort class docstring to
remove the stale claim that it materializes only two source forms, and replace
it with wording that accurately describes the broader canonical materialization
boundary including materialize_prepared_bundle and materialize_guide_source.

In `@backend/app/modules/artifacts/guide_formats.py`:
- Around line 309-340: The JPEG parsing logic in the format-detection function
should handle standalone markers before reading a segment length. In the marker
loop, recognize 0xD8, 0xD9, 0xD0–0xD7, and 0x01, advance past their marker bytes
without interpreting following bytes as a length, and preserve the existing
length-based handling for markers that carry segment lengths.
- Around line 248-255: Update the nested archive handling in _inspect_archive to
enforce a per-entry size limit before calling archive.read(info) for .zip
members. Skip or reject nested members whose info.file_size exceeds the defined
nested-archive ceiling, while preserving recursion for entries within the limit
and the existing aggregate decompression budget.

In `@backend/app/modules/artifacts/sources.py`:
- Around line 14-21: Declare a dedicated covariant type variable for the
return-only result type and use it in PreparedArtifactInspector instead of the
invariant _InspectionResult. Leave the inspect method signature and reader
behavior unchanged.

In `@backend/tests/test_guide_bindings.py`:
- Around line 464-511: Add a focused test alongside
test_materialization_verifies_classifies_replays_and_cleans_scratch that
performs an initial materialization, mutates the persisted
GuideSourceFormatClassification detected_format or classification_facts, then
re-materializes the same request and asserts the “guide classification
conflicts” branch raises the expected error while preserving the stored
evidence.

ℹ️ Review info
⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro Plus

Run ID: 2ef6aeeb-f146-4d22-81d0-fefe9249f0b1

📥 Commits

Reviewing files that changed from the base of the PR and between 3fc323d and 1b27dde.

📒 Files selected for processing (22)
  • .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/REVIEW_LOG.md
  • .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/chunks/WS-ART-001-03B2-guide-materialization-classification.md
  • .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/reviews/WS-ART-001-03B2-internal-review-evidence.md
  • .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/reviews/WS-ART-001-03B2-pr-trust-bundle.md
  • backend/alembic/versions/0040_guide_materialization_classification.py
  • backend/app/db/models.py
  • backend/app/interfaces/artifact_operations.py
  • backend/app/modules/artifacts/guide_formats.py
  • backend/app/modules/artifacts/guide_materialization.py
  • backend/app/modules/artifacts/models.py
  • backend/app/modules/artifacts/preparation.py
  • backend/app/modules/artifacts/schemas.py
  • backend/app/modules/artifacts/service.py
  • backend/app/modules/artifacts/sources.py
  • backend/scripts/run_test_lanes.py
  • backend/tests/conftest.py
  • backend/tests/test_alembic.py
  • backend/tests/test_artifact_architecture.py
  • backend/tests/test_artifact_preparation.py
  • backend/tests/test_guide_bindings.py
  • backend/tests/test_guide_formats.py
  • docs/spec_artifact_storage_service.md

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@Abiorh001
Abiorh001 marked this pull request as ready for review July 29, 2026 13:54
@abiorh-claw
abiorh-claw self-requested a review July 29, 2026 15:57
abiorh-claw
abiorh-claw previously approved these changes Jul 29, 2026
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Actionable comments posted: 2

🤖 Prompt for all review comments with AI agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

Inline comments:
In
@.agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/reviews/WS-ART-001-03B2-external-review-response.md:
- Around line 28-29: Update the command descriptions in the listed test bullets
to use unambiguous compound modifiers: “Focused guide-format and preparation
tests” and “Focused database-backed guide-materialization tests.”
- Around line 25-32: Separate the Hosted Backend and Agent Gates entry from the
completed reruns in the review-response document. Move it to a
pending/required-checks section, or replace it with the exact PR head and
recorded gate results only if those gates were actually executed.
🪄 Autofix (Beta)

Fix all unresolved CodeRabbit comments on this PR:

  • Push a commit to this branch (recommended)
  • Create a new PR with the fixes

ℹ️ Review info
⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro Plus

Run ID: 0fe45c71-7ec7-4aea-955a-96664ed178ad

📥 Commits

Reviewing files that changed from the base of the PR and between 1b27dde and 1381d37.

📒 Files selected for processing (10)
  • .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/REVIEW_LOG.md
  • .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/chunks/WS-ART-001-03B2-guide-materialization-classification.md
  • .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/reviews/WS-ART-001-03B2-external-review-response.md
  • .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/reviews/WS-ART-001-03B2-pr-trust-bundle.md
  • backend/alembic/versions/0040_guide_materialization.py
  • backend/app/interfaces/artifact_operations.py
  • backend/app/modules/artifacts/guide_formats.py
  • backend/app/modules/artifacts/sources.py
  • backend/tests/test_guide_bindings.py
  • backend/tests/test_guide_formats.py
🚧 Files skipped from review as they are similar to previous changes (7)
  • .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/chunks/WS-ART-001-03B2-guide-materialization-classification.md
  • .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/REVIEW_LOG.md
  • backend/app/interfaces/artifact_operations.py
  • .agent-loop/initiatives/WS-ART-001-immutable-artifact-storage/reviews/WS-ART-001-03B2-pr-trust-bundle.md
  • backend/tests/test_guide_bindings.py
  • backend/app/modules/artifacts/guide_formats.py
  • backend/tests/test_guide_formats.py

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coderabbitai Bot commented Jul 29, 2026

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@abiorh-claw
abiorh-claw self-requested a review July 29, 2026 17:31
@abiorh-claw
abiorh-claw merged commit 93ec3fb into main Jul 29, 2026
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@abiorh-claw
abiorh-claw deleted the codex/ws-art-001-03b2-guide-materialization-classification branch July 29, 2026 21:10
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2 participants