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  • University of Rochester - Mayer-Proschel Lab

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  1. Keyence-StitchEDOF Keyence-StitchEDOF Public

    Script to perform tile stitching from brightfield Keyence images and then perform extended depth-of-field. Takes tiled image sequence and the .gci metadata file from Keyence as input and outputs si…

    Python

  2. IBEX-PyReg IBEX-PyReg Public

    Registers multiplexed immunofluorescence image datasets by DAPI channels using ANTsPyx and PCC.

    Python

  3. scAnimator scAnimator Public

    Interactive 3D scRNAseq UMAP warp viewer — WebGL visualization with continuous embedding warping, gene expression overlays, and bloom rendering

    HTML

  4. badcat-ZIB badcat-ZIB Public

    Z-Image style adapter — image-conditioned IP-Adapter-style reference conditioning for Z-Image-Base. Trained-from-scratch StyleEmbedder + ComfyUI custom node.

    Python 2

  5. CapraIBEX CapraIBEX Public

    IBEX multiplex fluorescence microscopy analysis toolchain

    Python

  6. taskflow taskflow Public

    TaskFlow - Single-file React task management app

    HTML