updated rule filter (in merge_samples) - #64

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gmafrafortuna wants to merge 18 commits into

HighlanderLab:mainfrom

gmafrafortuna:main

Commits on Nov 20, 2023

updated rule filter (in merge_samples) so it starts from the file with the most samples
gmafrafortuna
committed
561fe75

Commits on Apr 12, 2024

changed rule all input to be the simplified tree
gmafrafortuna
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fd7503d
no changes
gmafrafortuna
committed
f8fa59c
now filtering overlapping samples from vcfs in one step
gmafrafortuna
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cfa7c01
simplified rule
gmafrafortuna
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4c318c3
changed options after testing to improve accuracy
gmafrafortuna
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4389bfb
updated script to add aa to vcf keeping all sites
gmafrafortuna
committed
107192f
updated rules and scripts for ts inference. final output is now simplified tree
gmafrafortuna
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cdc238c
script to simplify ts
gmafrafortuna
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4b3b914
updated default resources and increased for certain rules (to run on supernodes)
gmafrafortuna
committed
6e700c4
config file to run global cattle demography project
gmafrafortuna
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0b84d65
Merge branch 'HighlanderLab:main' into main
gmafrafortuna
authored
e86a93c

Commits on Jul 18, 2024

updated version to run cattle inferences
gmafrafortuna
committed
19e32cf
Merge branch 'main' into wip
gmafrafortuna
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f5f42bb
Merge pull request #1 from gmafrafortuna/wip
gmafrafortuna
authored
87c4a20

Commits on Jul 25, 2024

Update Snakefile
gmafrafortuna
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5606ece
Update ancestral_info_to_vcf.smk
gmafrafortuna
authored
f4cc4b1

Commits on Jul 26, 2024

Update cluster.json
gmafrafortuna
authored
a911031