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JimmySmilez/README.md

James Mordecai

Microbiologist & Bioinformatician

I am a doctoral student specializing in microbial genomics, metagenomics, and interactive data visualization. My work focuses on constructing automated analysis pipelines for microbial genomics and building intuitive web applications to explore biological datasets.

My programming toolkit includes R, Python, and Bash, along with workflow automation using Conda. I am passionate about making complex genomic data accessible through interactive dashboards built with R Shiny.

Check out my interactive PredKlebAMR Dashboard and Kenyan Human Gut Virome Dashboard to see examples of my visualization work.

📬 Connect with Me

🛠️ Technical Skills

Domain Tools & Technologies
Languages R, Python, Bash
Bioinformatics Tools fastp, SPAdes, MegaHit, Bowtie2, Minimap2, MetaBAT2, CheckM2, DRAM, PredKlebAMR-v2
Web & Visualization R Shiny, shinydashboard, ggplot2, Plotly
Environment Management Conda, Git, GitHub

Popular repositories Loading

  1. Interactive-Dashboard Interactive-Dashboard Public

    An interactive web-based dashboard developed using R Shiny. The dashboard dynamically visualizes the Kenyan virome.

    R

  2. Bacterial_Genome_Project Bacterial_Genome_Project Public

    De Novo Genome Assembly and Metabolic Profiling of a Hydrocarbon-Degrading Environmental Bacterium

    Shell

  3. PredKlebAMR-v1 PredKlebAMR-v1 Public

    Forked from omicscodeathon/predklebamr

    Predictive model for antimicrobial resistance in Klebsiella pneumoniae using Artificial Intelligence and Machine Learning

    R

  4. JimmySmilez JimmySmilez Public