All pull requests

Pull requests

• fix(growth): preserve estimated younger length at initialization

  #1879·awilnoaa opened Oct 16, 2026Contributor·4 tasks·

  ·

• update random effect tests

  #1877·ericward-noaa opened Oct 15, 2026Contributor·4 tasks·

  ·

• Chore: format feature branch

  #1876·github-actions[bot] opened Oct 15, 2026Bot·

  ·

• Chore: format feature branch

  #1874·github-actions[bot] opened Oct 15, 2026Bot·

  ·

• Document Pearson residual analysis in a vignette

  #1873·ericward-noaa with CopilotAI opened Oct 15, 2026·

  ·
  1

  7

  

• fix(output): label time-varying log_q by year

  #1858·grantdadams opened Oct 9, 2026Contributor·4 tasks·

  ·
  7

• feat(population): add spawning weight and fecundity at age to spawning output

  #1854·grantdadams opened Oct 9, 2026Contributor·4 tasks·

  ·
  2

• feat(FIMSFrame): remove weight at age averaging and add defaults

  #1851·grantdadams opened Oct 9, 2026Contributor·4 tasks·

  ·
  1

  3

• Update fims input vignette

  #1848·Andrea-Havron-NOAA opened Oct 8, 2026Collaborator·4 tasks·

  ·
  1

  1

• feat(fimsfit): store convergence check results on the fit

  #1844·grantdadams opened Oct 8, 2026Contributor·4 tasks·

  ·
  1

  19

• feat(setup_default_parameters): allow a catch of 0 by fixing F for that fleet and year

  #1841·grantdadams opened Oct 8, 2026Contributor·4 tasks·

  ·
  1

  1

• fix(data): fit catch and index in numbers when unit is "number"

  #1839·grantdadams opened Oct 8, 2026Contributor·4 tasks·

  ·
  1

  12

• feat(age_to_length_conversion): allow fleet- and year-specific conversion matrices

  #1817·grantdadams opened Oct 5, 2026Contributor·4 tasks·

  ·
  25

• feat(ageing error): allow input ageing error matrix with age-composition data

  #1811·grantdadams opened Oct 5, 2026Contributor·4 tasks·

  ·
  22

• feat(maturity): add empirical maturity at age

  #1808·grantdadams opened Oct 3, 2026Contributor·4 tasks·

  ·
  1

  1

• fix(output): label time-varying age-specific selectivity by year and age

  #1796·grantdadams opened Oct 1, 2026Contributor·4 tasks·

  ·
  3

• feat(growth): average population weight-at-age over the length-at-age distribution

  #1791·grantdadams opened Sep 30, 2026Contributor·4 tasks·

  ·
  1

• fix(distributions): split multinomial row lpmf equally across bins

  #1754·grantdadams opened Sep 28, 2026Contributor·4 tasks·

  ·
  3

• Refactor rcpp interface s4 to x ptr

  #1745·Andrea-Havron-NOAA opened Sep 24, 2026Collaborator·4 tasks·

  ·
  20

• docs: plot age-to-length distributions across modeled ages

  kind: vignette
  #1735·awilnoaa opened Sep 11, 2026Contributor·4 tasks·

  ·
  23

• Feature/derived quantity uncertainty

  #1713·msupernaw opened Aug 26, 2026Contributor·4 tasks·

  ·
  2

• Support TMB parameter maps

  #1706·msupernaw opened Aug 24, 2026Contributor·4 tasks·

  ·
  20

• Make fims::Vector out-of-bounds errors actionable with vector identity, index, and size

  #1667·Andrea-Havron-NOAA with CopilotAI opened Jul 28, 2026·

  ·
  1

  

• Add gmrf and precision builder functions as precursors for eventually adding DSEM

  #1594·e-perl-NOAA opened Jun 30, 2026Collaborator·4 tasks·

  ·
  45

• Add partition spec and index layout infrastructure for sex strata

  #1581·szu-yun-ko opened Jun 25, 2026Contributor·4 tasks·

  ·
  42