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The full bulk_in array is now passed into custom function #446

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The full bulk_in array is now passed into custom function #446

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e67b12b
The full bulk_in array is now passed into custom function
StephenNneji Jul 9, 2026
d0506b1
Event modifications to facilitate running in python
StephenNneji Jul 23, 2026
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9 changes: 9 additions & 0 deletions API/RAT.m
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Original file line number Diff line number Diff line change
Expand Up @@ -66,6 +66,12 @@
% Call the main RAT routine...
display = ~strcmpi(controls.display, displayOptions.Off.value);
textProgressBar(0, 0, display);
printFunc = @(x) fprintf("%s", x);
progressFunc = @(x) textProgressBar(x{1}, x{2});

eventManager.register(eventTypes.Message, printFunc);
eventManager.register(eventTypes.Progress, progressFunc);

% If display is not silent print a line confirming RAT is starting
if display
fprintf('Starting RAT ______________________________________________________________________________________________\n\n');
Expand All @@ -78,6 +84,9 @@
toc
end
textProgressBar(0, 0, true);
eventManager.unregister(eventTypes.Message, printFunc);
eventManager.unregister(eventTypes.Progress, progressFunc);

if any(strcmpi(controls.procedure, {procedures.NS.value, procedures.Dream.value}))
result = mergeStructs(result, bayesResults);
end
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4 changes: 2 additions & 2 deletions API/events/triggerEvent.m
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Expand Up @@ -22,9 +22,9 @@ function triggerEvent(eventType, varargin)
coder.extrinsic('eventManager.notify')
if coder.target('MATLAB') || coder.target('MEX')
if eventType == coderEnums.eventTypes.Message
fprintf("%s", varargin{1});
eventManager.notify(eventType, varargin{1});
elseif eventType == coderEnums.eventTypes.Progress
textProgressBar(varargin{1}, varargin{2});
eventManager.notify(eventType, varargin)
elseif eventType == coderEnums.eventTypes.Plot
result = varargin{1};
problemStruct = varargin{2};
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2 changes: 1 addition & 1 deletion examples/domains/customXY/domainsXY.m
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Expand Up @@ -27,7 +27,7 @@
vfWater = 1 - totalVF;

% Now convert the Volume Fractions to SLD's...
siSLD = vfSilicon * bulk_in;
siSLD = vfSilicon * bulk_in(contrast);
oxSLD = vfOxide * 3.41e-6;

% Layer SLD depends on whether we are calculating the domain or not...
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8 changes: 4 additions & 4 deletions targetFunctions/+domainsTF/processCustomFunction.m
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Expand Up @@ -18,11 +18,11 @@
coder.varsize('output2',[10000 numberOfOutputColumns], [1 1]);

if isnan(str2double(functionHandle))
[output1, subRoughs(i)] = callMatlabFunction(functionHandle, paramValues, bulkIns(i), bulkOuts, i, 1);
[output2, ~] = callMatlabFunction(functionHandle, paramValues, bulkIns(i), bulkOuts, i, 2);
[output1, subRoughs(i)] = callMatlabFunction(functionHandle, paramValues, bulkIns, bulkOuts, i, 1);
[output2, ~] = callMatlabFunction(functionHandle, paramValues, bulkIns, bulkOuts, i, 2);
else
[output1, subRoughs(i)] = callCppFunction(functionHandle, paramValues, bulkIns(i), bulkOuts, i, 1);
[output2, ~] = callCppFunction(functionHandle, paramValues, bulkIns(i), bulkOuts, i, 2);
[output1, subRoughs(i)] = callCppFunction(functionHandle, paramValues, bulkIns, bulkOuts, i, 1);
[output2, ~] = callCppFunction(functionHandle, paramValues, bulkIns, bulkOuts, i, 2);
end

% If SLD is real, add dummy imaginary column
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4 changes: 2 additions & 2 deletions targetFunctions/+normalTF/processCustomFunction.m
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Expand Up @@ -14,9 +14,9 @@
coder.varsize('output',[10000 numberOfOutputColumns],[1 1]);

if isnan(str2double(functionHandle))
[output, subRoughs(i)] = callMatlabFunction(functionHandle, paramValues, bulkIns(i), bulkOuts, i, 0);
[output, subRoughs(i)] = callMatlabFunction(functionHandle, paramValues, bulkIns, bulkOuts, i, 0);
else
[output, subRoughs(i)] = callCppFunction(functionHandle, paramValues, bulkIns(i), bulkOuts, i, 0);
[output, subRoughs(i)] = callCppFunction(functionHandle, paramValues, bulkIns, bulkOuts, i, 0);
end

% If SLD is real, add dummy imaginary column
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