This repository was created to store and share the data and scripts for the paper above.
DOI:
Below, we described the content.
Contente of the folder
.
├── Data
| └── 1.Phenotypes_bySeason.txt
│ └── 2.Phenotypes_GxEModels.txt
│ └── 3.dataH2.txt
│ └── 4.EigenValues_5MSet.txt
│ └── 5.Clades.csv
|
└── Analyses
| └── 1.Figure2_Plot_PCA.R
| └── 2.SupMat_Plot_h2.R
| └── 3.RUNME_ANOVA.R
| └── 4.RUNME_EMMAX.sh
| └── 4.GWAS_EMMAX.sh
| └── 4.RUNME_GAPIT.sh
| └── 4.GWAS_GAPIT.R
| └── 5.XPCLR_RunA.sh
| └── 5.XPCLR_RunB.sh
| └── auxFunctions_GAPIT.R # Modified version of GAPIT with a PCA running on 1M markers only
|
└── Figures
└── Clades.png
The Clades in high resolution. To see all the name in th three, download the file by clicking on it.
