Issues

• How to create a Repeat element STAR index for a RepBase fasta file?

  YeoLab/eCLIP#44 · Filter by author Jamie-King opened on Feb 12, 2025

• Why only read2 is used for peak calling?

  YeoLab/eCLIP#43 · Filter by author FionaMoon opened on Dec 7, 2023

• why CLIPPER only generates rep1 and rep2?

  YeoLab/eCLIP#42 · Filter by author FionaMoon opened on Dec 4, 2023
  2

• What should I do after peak calling?

  YeoLab/eCLIP#40 · Filter by author FionaMoon opened on Jul 18, 2023

• Standard paired-end barcodes

  YeoLab/eCLIP#39 · Filter by author MusculusMus opened on Jul 18, 2023

• Help with demo prerequisite files

  YeoLab/eCLIP#37 · Filter by author valerieT1998 opened on Apr 17, 2023
  1

• barcodecollapsepe.py

  YeoLab/eCLIP#35 · Filter by author juuinn opened on Jan 6, 2023

• Which barcode-specific bam are used?

  YeoLab/eCLIP#33 · Filter by author biofilos opened on Sep 20, 2022
  1

• STAR 2.7.4a and 2.7.6a not compatible with the Genome 20201

  YeoLab/eCLIP#32 · Filter by author Zanex233 opened on Sep 14, 2022

• Fisher exact test should be one sided

  YeoLab/eCLIP#31 · Filter by author algaebrown opened on Aug 4, 2022

• On AWS instance, cwltool install leads to "error in rdflib-jsonld setup command: use_2to3 is invalid."

  YeoLab/eCLIP#30 · Filter by author lynnhlee opened on Aug 4, 2022

• umi_tools import fails on single end cwl

  YeoLab/eCLIP#29 · Filter by author bounlu opened on Dec 9, 2021
  1

• error in Readme

  YeoLab/eCLIP#22 · Filter by author giardine opened on Jun 7, 2021
  1