Issues

• outrigger --index error: "AttributeError: 'Series' object has no attribute 'iteritems'"

  YeoLab/outrigger#104 · Filter by author jordimaggi opened on May 8, 2023
  2

• sqlite3.OperationalError: disk I/O error

  YeoLab/outrigger#103 · Filter by author LiangShaw opened on Oct 22, 2021

• ValueError: Cannot mask with non-boolean array containing NA / NaN values error

  YeoLab/outrigger#102 · Filter by author titand98 opened on Mar 15, 2021

• how to set multiple threads

  YeoLab/outrigger#101 · Filter by author fuhao1216 opened on Dec 23, 2020

• Database locked when detecting de novo exons after no novel exons found on a chromosome

  YeoLab/outrigger#100 · Filter by author QuentinLetourneur opened on Aug 17, 2020

• KeyError: junction

  YeoLab/outrigger#98 · Filter by author wbvguo opened on May 2, 2020
  2

• Calculating PSI of single-cell data with outrigger

  YeoLab/outrigger#96 · Filter by author hmutpw opened on Mar 19, 2020
  1

• Unstacked DataFrame is too big, causing int32 overflow

  YeoLab/outrigger#95 · Filter by author Qi-Yang-Bioinfo opened on Mar 10, 2020

• How to use outrigger index with "-c"?

  YeoLab/outrigger#94 · Filter by author QijinYin opened on Nov 26, 2019

• NotImplementedError: "flankBed"

  YeoLab/outrigger#93 · Filter by author YutingMa68 opened on Nov 13, 2019

• Table 'GRCh37.chromInfo' doesn't exist // ERROR: chrom "14" not found in genome file. Exiting.

  YeoLab/outrigger#89 · Filter by author Ekomshiro opened on May 15, 2018
  4

• ERROR IN -- Creating a "gffutils" database ---"database is locked"

  YeoLab/outrigger#88 · Filter by author memooooooo opened on Nov 23, 2017

• Core error when running outriger psi

  YeoLab/outrigger#87 · Filter by author cfbuenabadn opened on Aug 28, 2017

• outrigger index looping forever while updating gffutils database with novel exons on chr10 (mm10)

  YeoLab/outrigger#84 · Filter by author alaindomissy opened on Jun 6, 2017

• outrigger validate fails when outrigger_output/index/mxe/exon1.bed does not exist

  YeoLab/outrigger#82 · Filter by author ghost opened on Apr 20, 2017
  2

• outrigger index --splice-types error - KeyError: 'mxe'

  YeoLab/outrigger#81 · Filter by author ghost opened on Apr 20, 2017
  1

• Remember, flat is better than nested

  YeoLab/outrigger#79 · Filter by author olgabot opened on Apr 7, 2017
  1

• Be explicit about inputs/outputs

  YeoLab/outrigger#78 · Filter by author olgabot opened on Apr 7, 2017

• Concatenate psi/se/summary.csv and psi/mxe/summary.csv

  YeoLab/outrigger#72 · Filter by author olgabot opened on Jan 6, 2017

• Add link to Slack's empathy in pull requests link to PULL_REQUEST template

  YeoLab/outrigger#71 · Filter by author olgabot opened on Jan 6, 2017

• Remove features with exon lengths==1

  YeoLab/outrigger#70 · Filter by author olgabot opened on Jan 6, 2017

• Installing via environment.yml doesn't add command line entry points

  YeoLab/outrigger#68 · Filter by author olgabot opened on Dec 29, 2016
  2

• Case Xa/b doesn't show - only "Case Xa"

  YeoLab/outrigger#67 · Filter by author olgabot opened on Dec 22, 2016

• If novel_exons.gtf exists, still gets overwritten

  YeoLab/outrigger#66 · Filter by author olgabot opened on Dec 22, 2016

• When using an external junction reads file, copy to outrigger_output folder

  YeoLab/outrigger#65 · Filter by author olgabot opened on Dec 9, 2016