Issues

• Where can I find European-ancestry (EUR) hg38/GRCh38 LDSC reference files?

  bulik/ldsc#505 · Filter by author AuMiz888 opened on Oct 12, 2026

• LDSC installation fails due to incorrect pip executable in Python 2.7 environment

  bulik/ldsc#504 · Filter by author martinezjaime opened on Sep 2, 2026

• LDSC for non EUR/EAS ancestries

  bulik/ldsc#503 · Filter by author rijuldesai opened on Jun 29, 2026
  1

• <200,000 variants

  bulik/ldsc#501 · Filter by author hayley-power opened on May 29, 2026

• ldsc39 ./munge_sumstats.py has issue with *.gz file

  bulik/ldsc#500 · Filter by author YuandanZhang opened on May 25, 2026

• East Asian LD scores file

  bulik/ldsc#499 · Filter by author SR-BioInSilico opened on May 20, 2026

• LDSC for survival model

  bulik/ldsc#498 · Filter by author Xiaoping-Wu opened on Mar 23, 2026

• how to do Partitioned genetic correlation analysis

  bulik/ldsc#497 · Filter by author yikeshu0611 opened on Mar 7, 2026

• LDSC Genetic Correlation Analysis Returns All NA Values - Seeking Help

  bulik/ldsc#496 · Filter by author NoahTsui1998 opened on Jan 19, 2026

• Quality Control when converting 1000 Genome Project Phase 3 vcf data into plink file

  bulik/ldsc#495 · Filter by author wusiwei2022 opened on Dec 30, 2025

• negative MAF/LD Score Correlation

  bulik/ldsc#494 · Filter by author KizBaolin opened on Dec 18, 2025

• Segmentation fault

  bulik/ldsc#492 · Filter by author 123liumeng opened on Nov 4, 2025

• Number of variants included for computing LD score at each SNP

  bulik/ldsc#491 · Filter by author gsgarlata opened on Jul 30, 2025

• Error running munge_sumstats.py

  bulik/ldsc#490 · Filter by author mmaalvarez opened on Jul 29, 2025
  2

• Is it possible to run heritability and/or partitioned heritability with just p values and no signed-sumstats? And if yes - how?

  bulik/ldsc#489 · Filter by author Ayshan4444 opened on Jul 23, 2025
  1

• SNPs included in the pre-computed LD scores for European are much less than SNPs in 1000 genome phase 1 dataset

  bulik/ldsc#488 · Filter by author wusiwei2022 opened on Jul 1, 2025

• Clarification on Baseline Model and Obtaining Enrichment Scores for Cell-Type-Specific Heritability (e.g., with scATAC-seq annotations)

  bulik/ldsc#484 · Filter by author ShanshanHe-44 opened on Jun 11, 2025
  1

• Error with calculating LD score using w_hm3.snplist: After merging with --print-snps, no SNPs remain.

  bulik/ldsc#483 · Filter by author ShanshanHe-44 opened on May 30, 2025
  1

• what is the value in parenthesis in Total Observed scale h2?

  bulik/ldsc#481 · Filter by author complexgenome opened on May 14, 2025
  3

• How to make customize panel ?

  bulik/ldsc#479 · Filter by author jiangpuxuan opened on May 12, 2025
  1

• ldsc python 3 H2 estimation question

  bulik/ldsc#478 · Filter by author Freddddy-20 opened on May 10, 2025
  1

• Baseline LD scores

  bulik/ldsc#476 · Filter by author gouthamatla opened on Apr 16, 2025
  2

• LDSC negative heritability

  bulik/ldsc#475 · Filter by author beeya0630 opened on Apr 12, 2025
  1

• rg values not in the [-1,1] bound&NAN Values

  bulik/ldsc#472 · Filter by author AyselenKuru opened on Jan 13, 2025
  2

• how to build my own input weight files for --w-ld-chr

  bulik/ldsc#471 · Filter by author FangrenLan97 opened on Jan 8, 2025
  3