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test: cover annotation lookup helpers - #7

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byee4 merged 1 commit into
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codex/tests-annotator-20261004-092700
Oct 5, 2026
Merged

byee4 merged 1 commit into
masterfrom
codex/tests-annotator-20261004-092700

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@byee4

@byee4 byee4 commented Oct 4, 2026

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Summary

  • Add six self-contained unit tests for public gene, transcript, exon, and name lookup helpers.
  • Clarify the tested helpers' docstrings without changing implementation.
  • Add a GitHub Actions job that runs the unit tests on PRs to master.

Verification

  • python -m pytest -q unit_tests: 6 passed locally (Python 3.10).
  • python -m pytest -q: legacy tests cannot collect because their expected generated test/data/*.gtf.db fixtures are absent. The new unit tests do not require those fixtures.

@byee4
byee4 merged commit 67fd312 into master Oct 5, 2026
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