California Academy of Sciences, Institute for Biodiversity Science & Sustainability
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RAxML_Astral_trees
RAxML_Astral_trees PublicThis project generates Astral-III species trees from gene trees generated from RAxML using UCE data generated by the Phyluce pipeline. Then runs an Astral III analysis.
Repositories
- antweb Public
AntWeb is the world's largest online database of images, specimen records, and natural history information on ants. It is community driven and open to contribution from anyone with specimen records, natural history comments, or images.
- LabelLlama_CAS Public Forked from rafelafrance/LabelLlama
Extract information from labels on images of museum specimens. Custom modifications for the California Academy of Sciences..
- web-asset-importer Public
Image client used in conjunction with web-asset-server to process images/data into image server, and specify databases.
- cas_bot_georeference Public
The python GeoReferencer which defines a BELS --> Geolocate --> GVS pipeline to assign lat/long coordinates + error radii.
- expedition-clustering Public
Expedition Clustering groups California Academy of Sciences botany specimens into inferred expeditions using a reproducible spatiotemporal DBSCAN pipeline.
- cas_grouper Public Forked from BRITorg/Grouper
A forked version of grouper from BRITorg. Reduces unique localities via fuzzy matching and normalization.
- picturae_csv_parser Public
stand alone program , used to QC csvs ready for specify import from picturae, nfn and digileap supplied data
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