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[WIP] Summarize insertions - #1684

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Donaim wants to merge 30 commits into
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390-fix
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Donaim wants to merge 30 commits into
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390-fix

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@Donaim

@Donaim Donaim commented Sep 15, 2026

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Closes #390

@Donaim Donaim changed the title 390 fix Summarize insertions Sep 15, 2026
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codecov Bot commented Sep 15, 2026

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Codecov Report

❌ Patch coverage is 92.63158% with 7 lines in your changes missing coverage. Please review.
✅ Project coverage is 87.26%. Comparing base (a806b96) to head (4bf13b7).
⚠️ Report is 17 commits behind head on master.

Files with missing lines Patch % Lines
micall/core/aln2counts.py 88.23% 6 Missing ⚠️
micall/g2p/fastq_g2p.py 97.72% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master    #1684      +/-   ##
==========================================
+ Coverage   86.94%   87.26%   +0.31%     
==========================================
  Files          30       30              
  Lines        7379     7461      +82     
==========================================
+ Hits         6416     6511      +95     
+ Misses        963      950      -13     

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@Donaim Donaim changed the title Summarize insertions [WIP] Summarize insertions Sep 15, 2026
@Donaim Donaim added this to the 7.19 milestone Sep 16, 2026
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Summarize insertions

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