Issues

• flash: Text file compression/decompression

  cucapra/pollen#272 · Filter by author sampsyo opened on May 27, 2026
  1

• flash: Parallel evaluation

  cucapra/pollen#271 · Filter by author sampsyo opened on May 27, 2026

• Next steps for fgfa window-depth

  cucapra/pollen#264 · Filter by author sampsyo opened on May 12, 2026

• Tracker: flash

  cucapra/pollen#254 · Filter by author sampsyo opened on Apr 25, 2026

• PackedSeq: Try branchless compression

  cucapra/pollen#248 · Filter by author sampsyo opened on Jan 8, 2026

• Redesign the fgfa command-line interface

  cucapra/pollen#247 · Filter by author sampsyo opened on Jan 7, 2026

• Pangenotype matrix: end-to-end GWAS regression demo

  cucapra/pollen#246 · Filter by author sampsyo opened on Jan 7, 2026

• Pangenotype matrix: use a dense bit vector

  cucapra/pollen#245 · Filter by author sampsyo opened on Jan 7, 2026

• New GFA operator: lace

  cucapra/pollen#236 · Filter by author sampsyo opened on Nov 19, 2025

• Compress & decompress text files within FlatGFA

  cucapra/pollen#235 · Filter by author sampsyo opened on Nov 19, 2025

• Delta encoding for Span and Id

  cucapra/pollen#234 · Filter by author sampsyo opened on Nov 19, 2025

• Switch span representation from start/end to start/length

  cucapra/pollen#233 · Filter by author sampsyo opened on Nov 19, 2025

• Systematic performance measurement

  cucapra/pollen#229 · Filter by author sampsyo opened on Oct 17, 2025
  

• Expose more FlatGFA functions in the Python API

  cucapra/pollen#228 · Filter by author sampsyo opened on Oct 17, 2025

• Add a steps-by-segment index

  cucapra/pollen#227 · Filter by author sampsyo opened on Oct 17, 2025

• Remove the 32-bit limit on step counts

  cucapra/pollen#226 · Filter by author sampsyo opened on Oct 17, 2025

• Try padding the FlatGFA file format for better alignment

  cucapra/pollen#225 · Filter by author sampsyo opened on Oct 17, 2025
  

• Port 2D layout algorithm to FlatGFA

  cucapra/pollen#224 · Filter by author sampsyo opened on Oct 17, 2025

• Implement bubble finding in FlatGFA

  cucapra/pollen#223 · Filter by author sampsyo opened on Oct 17, 2025

• Simple small-graph visualization with GraphViz

  cucapra/pollen#222 · Filter by author sampsyo opened on Oct 17, 2025
  1

• Bring flattening to BED files

  cucapra/pollen#206 · Filter by author sampsyo opened on Mar 20, 2025
  2

• Expose GAF-lookup functionality through the FlatGFA Python API

  cucapra/pollen#205 · Filter by author sampsyo opened on Mar 20, 2025
  1

• Sub-byte sequence data packing

  cucapra/pollen#204 · Filter by author sampsyo opened on Mar 20, 2025

• Tracker: FlatGFA benchmarks

  cucapra/pollen#185 · Filter by author sampsyo opened on May 18, 2024

• Tracker: FlatGFA data structure optimization

  cucapra/pollen#184 · Filter by author sampsyo opened on May 18, 2024