Multilaminar simulation

Simulation and analysis code accompanying the paper:

Szul MJ, Maspoli M, Shelepenkov D, Agarwal I, Moreau Q, Gailhard S, Ferez M, Fernandez Pujol C, Zhu Y, Hiba B, Daligault S, Lamberton F, Schwartz D, Mattout J, Bonnefond M, Dykstra AR, Bestmann S, Barnes GR, Bonaiuto JJ (2026). Multilayer MEG source modelling enables depth-resolved laminar inference in humans bioRxiv DOI: https://doi.org/10.1101/2025.05.28.656642.

Requirements

Python v3.7
laMEG v0.0.7
pandas v1.3.5
PIL v9.5.0
VBA toolbox for Bayesian model comparison

Name		Name	Last commit message	Last commit date
figures		figures
utilities		utilities
.gitignore		.gitignore
README.md		README.md
create_agm.ipynb		create_agm.ipynb
mid_sd_iteration_2_source_snr.json		mid_sd_iteration_2_source_snr.json
pipeline_01_process_surfaces.py		pipeline_01_process_surfaces.py
pipeline_02_snr_simulations.py		pipeline_02_snr_simulations.py
pipeline_03_coreg_error_simulations.py		pipeline_03_coreg_error_simulations.py
pipeline_04_2source_snr_simulations.py		pipeline_04_2source_snr_simulations.py
pipeline_05_whole_brain_simulations.py		pipeline_05_whole_brain_simulations.py
pipeline_06_column_orientation_simulations.py		pipeline_06_column_orientation_simulations.py
pipeline_07_snr_ebb_simulations.py		pipeline_07_snr_ebb_simulations.py
pipeline_08_snr_patch_size_simulations.py		pipeline_08_snr_patch_size_simulations.py
pipeline_09_snr_win_size_simulations.py		pipeline_09_snr_win_size_simulations.py
pipeline_10_snr_pink_noise_simulations.py		pipeline_10_snr_pink_noise_simulations.py
pipeline_11_coreg_error_pink_noise_simulations.py		pipeline_11_coreg_error_pink_noise_simulations.py
pipeline_12_snr_interference_simulations.py		pipeline_12_snr_interference_simulations.py
pipeline_13_coreg_error_interference_simulations.py		pipeline_13_coreg_error_interference_simulations.py
pipeline_14a_create_agm_surfaces.py		pipeline_14a_create_agm_surfaces.py
pipeline_14b_snr_agm_simulations.py		pipeline_14b_snr_agm_simulations.py
pipeline_14c_coreg_error_agm_simulations.py		pipeline_14c_coreg_error_agm_simulations.py
pipeline_15a_compute_bem_model.m		pipeline_15a_compute_bem_model.m
pipeline_15b_snr_bem_simulations.py		pipeline_15b_snr_bem_simulations.py
pipeline_15c_coreg_error_bem_simulations.py		pipeline_15c_coreg_error_bem_simulations.py
run_2source_snr_sims.sh		run_2source_snr_sims.sh
run_coregerr_agm_sims.sh		run_coregerr_agm_sims.sh
run_coregerr_bem_sims.sh		run_coregerr_bem_sims.sh
run_coregerr_interference_sims.sh		run_coregerr_interference_sims.sh
run_coregerr_pink_noise_sims.sh		run_coregerr_pink_noise_sims.sh
run_coregerr_sims.sh		run_coregerr_sims.sh
run_ori_sims.sh		run_ori_sims.sh
run_snr_agm_sims.sh		run_snr_agm_sims.sh
run_snr_ebb_sims.sh		run_snr_ebb_sims.sh
run_snr_intereference_sims.sh		run_snr_intereference_sims.sh
run_snr_patch_size_sims.sh		run_snr_patch_size_sims.sh
run_snr_pink_noise_sims.sh		run_snr_pink_noise_sims.sh
run_snr_sims.sh		run_snr_sims.sh
run_snr_win_size_sims.sh		run_snr_win_size_sims.sh
run_whole_brain_sims.sh		run_whole_brain_sims.sh
settings.json		settings.json
vba_motor_epoch_mefI.m		vba_motor_epoch_mefI.m
vba_motor_epoch_mefI_win_size.m		vba_motor_epoch_mefI_win_size.m
vba_motor_epoch_mf.m		vba_motor_epoch_mf.m
vba_motor_epoch_mf_win_size.m		vba_motor_epoch_mf_win_size.m

Navigation Menu

Repository files navigation

Multilaminar simulation

Requirements

About

Releases

Packages

Contributors

Languages

Latest commit

History

Folders and files

Repository files navigation

Multilaminar simulation

Requirements

About

Resources

Stars

Watchers

Forks

Releases

Packages

Contributors

Languages