ft fire --ont failing with TEnCATS (enriched) ONT reads

[kerrybubb]

minimal_crash_sample.bam.gz

Thanks for using fibertools-rs! To help with bug reports I need all the following items:

• The exact command that produced the error along with the error message.
• A minimal example that reproduces the error including example input files uploaded to GitHub.
• Version of fibertools-rs [e.g. v0.0.6]
• OS: [e.g. macOS, Unix, Linux]

• ft version: v0.13.0
• Command:  ft fire --ont input.bam output.bam 
• Error:  range start index 4294944243 out of range for slice of length 9910  at  fire.rs:243 
• Data: TEnCATS-derived ONT fiber-seq with nucleosome/MSP annotations (via dorado + fibertools)

[mrvollger]

There should be a more informative error or an option to skip, but this is happening because supplementary alignments in this BAM file are hard-clipped, which invalidates both fibertools tags and basemod tags. So I'd recommend realigning the data without hard-clipping.

Thank you very much for including data to debug with!