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test(cladistics): correct the jplace weighted UniFrac expectation (follow-up to #239) - #241

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test(cladistics): correct the jplace weighted UniFrac expectation (follow-up to #239)#241
hyperpolymath wants to merge 15 commits into
mainfrom
arena/75b939c4-metamanifold-webui

Commits on Oct 23, 2026
- fix(cladistics): load the DOI module, drop a duplicate route include, and repair the CladeCumulus readers
  
  Arena Agent
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- Merge #223 into main and preserve unplaced placement mass
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- fix(cladistics): normalise treeFile at the request boundary
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  d9a444c
- fix(cladistics): divide weighted UniFrac by the library size, not the placed mass
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  f5830a1
- fix(stats): implement the missing erfc, and repair two never-run tests
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- Merge main (#226/#217) and keep the unplaced-mass fix
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- Merge #230 into current main and answer its review findings
  
  hyperpolymath
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- fix(cladistics): clear a vacated clade's residual along with its count
  
  hyperpolymath
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- ci: re-fire the PR checks for 58848d9
  
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- Update test/unit/test_clade_cumulus.jl
  
  hyperpolymath
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  coderabbitai[bot]
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- Merge main (#234/#236/#237) into the #230 follow-up
  
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- Merge the branch's own CodeRabbit suggestion commit (869ea15)
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- Document CladeCumulus parsing, UniFrac calculations, move reaggregation, and explorer behavior
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- fix(cladistics): exclude emptied clades from tip counts; harden frontend parsers
  
  hyperpolymath
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  arena-agent
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- test(cladistics): correct the jplace weighted UniFrac expectation
  
  hyperpolymath
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  a7bff96

Commits

Commits on Oct 23, 2026