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chore(deps): bump github/codeql-action/upload-sarif from 4.39.0 to 4.39.1 - #290

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@dependabot

@dependabot dependabot Bot commented on behalf of github Oct 25, 2026

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Bumps github/codeql-action/upload-sarif from 4.39.0 to 4.39.1.

Release notes

Sourced from github/codeql-action/upload-sarif's releases.

v4.39.1

  • Update default CodeQL bundle version to 2.27.3. #4256
Changelog

Sourced from github/codeql-action/upload-sarif's changelog.

CodeQL Action Changelog

See the releases page for the relevant changes to the CodeQL CLI and language packs.

[UNRELEASED]

No user facing changes.

4.39.1 - 21 Oct 2026

  • Update default CodeQL bundle version to 2.27.3. #4256

4.39.0 - 15 Oct 2026

  • Breaking change: Bump the minimum required CodeQL bundle version to 2.20.7. #4205
  • The codeql-action/analyze step now validates that a correct argument for the checkout_path input has been provided. The checkout_path input must be set to the path where the repository that is being analyzed is checked out at on the runner, if that path is something other than the workspace root. If the path does not point to a repository checkout or is different from the path that was used by codeql-action/init, then the CodeQL Action now produces a warning. #4148
  • Resolved an issue with third-party caching implementations that prevented caches from being restored correctly. #4206
  • The codeql-action/start-proxy step that is used in Code Scanning Default Setup now finds CodeQL releases using the same logic as codeql-action/init. This primarily benefits customers who are using GitHub instances other than github.com where the codeql-action/start-proxy step may previously have been unable to locate recent releases and ended up using outdated versions of the private registry authentication proxy as a result. #4198

4.38.3 - 08 Oct 2026

  • Upcoming breaking change: CodeQL version 2.21.2 and earlier were discontinued on 24 September 2026 alongside GitHub Enterprise Server 3.17, and will be unsupported by the next minor release of the CodeQL Action. Added a deprecation warning for customers using these versions of CodeQL. #4188
  • Update default CodeQL bundle version to 2.27.2. #4203
  • Fixed a bug where the decision of whether to use a per-language bundle did not account for custom configurations that reference queries outside of compiled CodeQL packs. This issue was caught during internal testing and did not affect any customer repositories. We will resume the roll out of per-language bundles in the coming weeks. #4184

4.38.2 - 24 Sept 2026

  • Update default CodeQL bundle version to 2.27.1. #4160

4.38.1 - 18 Sept 2026

  • The CodeQL Action now has experimental support for CodeQL releases for which per-language bundles are available. Per-language bundles support analysis for a single language and are therefore smaller than the combined bundles that allow analysis for all supported languages. As a result, per-language bundles take up less space on disk and are faster to download. We expect to roll this change out to everyone in the coming weeks. #4146

4.38.0 - 09 Sept 2026

  • On GitHub-hosted runners, the CodeQL Action now deletes unused CodeQL bundles from the toolcache before downloading a different bundle, which frees up disk space for the analysis. We expect to roll this change out to everyone in September. #4124
  • The CodeQL Action now supports CodeQL releases that are compatible with Linux Arm64 and downloads the native linux-arm64 CodeQL bundle when available. #4072
  • Update default CodeQL bundle version to 2.27.0. #4129

4.37.9 - 26 Aug 2026

  • Update default CodeQL bundle version to 2.26.4. #4106

4.37.8 - 21 Aug 2026

No user facing changes.

4.37.7 - 13 Aug 2026

  • Update default CodeQL bundle version to 2.26.3. #4085

... (truncated)

Commits
  • 9b32540 Merge pull request #4257 from github/update-v4.39.1-c5a2f4b0f
  • b5e1ed9 Trigger workflows
  • 20f5ec3 Update changelog for v4.39.1
  • c5a2f4b Merge pull request #4245 from github/henrymercer/graduate-overlay-trap-caching
  • 61a5a80 Merge pull request #4256 from github/update-bundle/codeql-bundle-v2.27.3
  • 3dd33f8 Merge pull request #4249 from github/mbg/upload-improvements-for-4223
  • b96e339 Change comment for getConfig call in upload-sarif
  • 7fa4518 Use shouldSkipSarifUpload in analyze-action.ts
  • a69c7cb Document that setting the env vars to false takes precedence
  • 74ddcd9 Fix typo in comment
  • Additional commits viewable in compare view

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Bumps [github/codeql-action/upload-sarif](https://github.com/github/codeql-action) from 4.39.0 to 4.39.1.
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](github/codeql-action@6f2ac81...9b32540)

---
updated-dependencies:
- dependency-name: github/codeql-action/upload-sarif
  dependency-version: 4.39.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code labels Oct 25, 2026
@coderabbitai

coderabbitai Bot commented Oct 25, 2026

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@sonarqubecloud

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hyperpolymath pushed a commit that referenced this pull request Oct 25, 2026
Dependabot opened #287, #288, #289 and #290 within an hour of each other. Three
of them move an action to the exact SHA this repository already uses elsewhere,
so they are one change - 'use the version already pinned' - and merging them
separately costs three serialised runs of the full suite on main (Julia tests
alone is 20-35 minutes), plus a rebase of the remaining two after each merge.

- actions/cache/restore and actions/cache/save 4.3.0 -> 6.1.0, the SHA
  actions/cache is already pinned at in six places.
- actions/upload-artifact 4.6.2 -> 7.0.2, the SHA already pinned in four.
- upload-sarif's comment claimed v4.38.0 and '4.38.1 blocked estate-wide',
  while the pinned SHA actually resolves to v4.39.0 on Dependabot's reading, so
  the note described a version the pin was already past. The comment now states
  what is true and why the SHA rather than the tag is the pin.

github/codeql-action is now ignored by Dependabot: a pin that carries an
estate-wide decision should be moved by hand with its comment, not silently.
That leaves #290 (4.39.0 -> 4.39.1) as the owner's call rather than a bot's.

Co-authored-by: arena-agent <297053741+arena-agent@users.noreply.github.com>

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Owner

Not merged, and the reason is the comment, not the version.

The diff moves the pin but leaves its comment as it was:

- github/codeql-action/upload-sarif@6f2ac81f… # v4.38.0 (4.38.1 blocked estate-wide; nexia-list#100)
+ github/codeql-action/upload-sarif@9b325408… # v4.38.0 (4.38.1 blocked estate-wide; nexia-list#100)

Dependabot reads the pinned SHA as 4.39.0, so the comment was already describing a version this repository had moved past, while still recording an estate-wide block. A reviewer cannot decide from that diff whether the new SHA is blocked, allowed, or exempt — and the block is a decision made elsewhere, not something this repository's files can answer.

So #292 corrects the comment to state what is true (the SHA resolves to v4.39.0, and the SHA is the pin), and adds an ignore rule so a pin carrying an estate-wide decision is no longer rewritten by a bot. Re-open this, or move the pin by hand with its comment, once you know whether the block covers 4.39.x — the only change in 4.39.1 is the bundled CodeQL version.

@dependabot @github

dependabot Bot commented on behalf of github Oct 25, 2026

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OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version. You can also ignore all major, minor, or patch releases for a dependency by adding an ignore condition with the desired update_types to your config file.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.

@dependabot
dependabot Bot deleted the dependabot/github_actions/github/codeql-action/upload-sarif-4.39.1 branch October 25, 2026 11:40
hyperpolymath added a commit that referenced this pull request Oct 25, 2026
…292)

## Change and reason

Dependabot opened **four pull requests in an hour** (#287, #288, #289,
#290). Three of them move an action to the **exact SHA this repository
already pins elsewhere**, so they are one change — "use the version
already in use" — and merging them one at a time costs three serialised
runs of the full suite on `main` (`Julia tests` alone is 20–35 min),
plus a rebase of the remaining two after each merge. This does the three
in one pass and leaves the fourth to a person.

| Action | From | To | Why it is safe |
| --- | --- | --- | --- |
| `actions/cache/restore`, `actions/cache/save` | 4.3.0 | **6.1.0** |
Same SHA `actions/cache` is already pinned at in six places in `ci.yml`.
|
| `actions/upload-artifact` | 4.6.2 | **7.0.2** | Same SHA already
pinned in four places (`ci.yml` line 501, `hypatia-scan-reusable.yml`
×2). |
| `github/codeql-action/upload-sarif` | — | unchanged | Comment
corrected only: see below. |

### The one that needed reading, not merging

#290 bumps `upload-sarif` "from 4.39.0 to 4.39.1", while the comment
beside the pin says:

```
uses: github/codeql-action@6f2ac81f… # v4.38.0 (4.38.1 blocked estate-wide; nexia-list#100)
```

Two facts that do not fit together: Dependabot resolves the pinned SHA
to **4.39.0**, so the comment was already describing a version the pin
had moved past, and it still records an estate-wide block on 4.38.1. A
reviewer cannot tell from the diff whether the new SHA is blocked,
allowed, or something else — the comment contradicts the pin.

So this PR does **not** take the 4.39.1 bump. It corrects the comment to
state what is true (the SHA resolves to v4.39.0, and the SHA rather than
the tag is the pin), and adds an `ignore` rule so Dependabot stops
rewriting a pin that carries an estate-wide decision:

```yaml
ignore:
  - dependency-name: github/codeql-action
    update-types: [version-update:semver-major, version-update:semver-minor, version-update:semver-patch]
```

#290 stays open as the owner's call: it is a patch release whose only
change is the bundled CodeQL version, and whether the estate's block
reaches 4.39.x is not something this repository's files can answer.

## Validation

```
bash scripts/check-governance-contract.sh    # 70 checks passed (unchanged on this branch)
bash scripts/tests/test-governance-contract.sh
```

All workflow files and `.github/dependabot.yml` parse as YAML, and the
four changed SHAs are byte-identical to the ones already used in this
repository (verified by grep, not by trust in the bot).

**Not run:** the Julia and frontend suites — no Julia or TypeScript is
touched. CI runs them.

## Scope

Closing #287, #288 and #289 in favour of this, so the pending dependency
work is one pull request instead of three. No pin moves to a SHA this
repository does not already use; no `renv.lock`, `Manifest.toml` or
`tool_versions.yml` change.

## Contribution checks

- [x] I followed [CONTRIBUTING.md](../CONTRIBUTING.md).
- [x] This branch starts at `main`'s tip and has no merge commits from
it.
- [x] CI has run; see checks.
- [x] Existing licensing, citation and acknowledgement text is
unchanged.

Co-authored-by: Arena Agent <agent@arena.ai>
Co-authored-by: arena-agent <297053741+arena-agent@users.noreply.github.com>
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