Issues

• Inconsistent default value for sga assemble -l

  jts/sga#169 · Filter by author Griffan opened on May 18, 2023

• sga-preqc-report.py Unable to parse the pattern

  jts/sga#167 · Filter by author Sven-Winter opened on Nov 6, 2021

• running problems with graph-diff

  jts/sga#165 · Filter by author MingjingKang opened on Nov 21, 2020

• installation problem with google-sparsehash

  jts/sga#164 · Filter by author AndreaQ7 opened on Jul 29, 2020
  5

• OverlapProcess.h Missing

  jts/sga#163 · Filter by author cgroza opened on Jul 7, 2020

• index for large .fastq file

  jts/sga#161 · Filter by author sunsac opened on Jan 17, 2020

• Inconsistent format representation for assembly graph edges

  jts/sga#160 · Filter by author anuradhawick opened on Dec 2, 2019
  1

• Python 2 is end of life on 2020-01-01

  jts/sga#158 · Filter by author mr-c opened on Aug 6, 2019
  1

• How to query occurrences of a sequence in sai and rsai ?

  jts/sga#157 · Filter by author kounkou opened on Jun 18, 2019

• configure forces -std=c++98 but that should be moved to relevant Makefiles or sga code adjusted

  jts/sga#156 · Filter by author mmokrejs opened on Apr 4, 2019
  6

• sga-astat module not found

  jts/sga#153 · Filter by author paschalis51d opened on Mar 14, 2019

• preqc 'variant branches in k-de Bruijn graph' no y-axis title

  jts/sga#138 · Filter by author nottwy opened on Jun 15, 2017

• CFFLAGS & CXXFAGS

  jts/sga#137 · Filter by author nottwy opened on Jun 14, 2017

• Error: Duplicate read ID - sga-bam2de.pl

  jts/sga#136 · Filter by author a-lud opened on Apr 6, 2017
  2

• sga scaffolding and mate-pair orientation

  jts/sga#135 · Filter by author edu3716 opened on Mar 7, 2017

• sga rmdup vs sga filter --no-kmer-check.

  jts/sga#134 · Filter by author yeban opened on Jan 21, 2017

• GCC-6: WARNING unordered_map: present but cannot be compiled

  jts/sga#133 · Filter by author ppericard opened on Jan 11, 2017
  1

• sga index segfault with large values of -d

  jts/sga#131 · Filter by author sjackman opened on Nov 3, 2016
  11

• configure issues

  jts/sga#130 · Filter by author irenatfh opened on Nov 3, 2016
  8

• fastq files produced by 'sga correct' not always match the length of the reads

  jts/sga#129 · Filter by author mictadlo opened on Sep 26, 2016

• scaffold2fasta: Assertion `expectedOverlap < (int)contigString.length()' failed

  jts/sga#125 · Filter by author sjackman opened on Jul 30, 2016
  18

• DistanceEst --mean

  jts/sga#124 · Filter by author sjackman opened on Jul 29, 2016

• sga-align: prepareReads: Cannot parse record

  jts/sga#121 · Filter by author sjackman opened on Jul 25, 2016
  5

• cannot configure with bamtools

  jts/sga#117 · Filter by author ArielPaulson opened on May 22, 2016
  6

• Missing scripts in bin directory

  jts/sga#116 · Filter by author jsmedmar opened on May 19, 2016