Issues

• Error in getSexFromCoverage: first argument must be a vector

  lima1/PureCN#406 · Filter by author mi3112 opened on May 6, 2026

• No segments/genes with total copy number 0 in *genes.tsv output files of PureCN

  lima1/PureCN#405 · Filter by author rgraus opened on May 3, 2026
  1

• PureCN compatibility with CNVKit files

  lima1/PureCN#404 · Filter by author hey-saurabh opened on Feb 26, 2026

• somatic variants in BAF plots

  lima1/PureCN#401 · Filter by author molpatho opened on Jan 14, 2026

• PureCN crashes when plotting (plotTypeBAF)

  lima1/PureCN#399 · Filter by author kmavrommatis opened on Nov 26, 2025
  1

• Clarify PSCBS usage (regular release versus fork)

  lima1/PureCN#397 · Filter by author lbeltrame opened on Oct 21, 2025

• Make latest version available on DockerHub

  lima1/PureCN#396 · Filter by author madelonst opened on Oct 3, 2025

• NormalDB FileBasedVidMapperException error

  lima1/PureCN#394 · Filter by author HuZhuocheng opened on Sep 20, 2025
  4

• Error in if (opt$out_vcf)

  lima1/PureCN#393 · Filter by author HuZhuocheng opened on Aug 20, 2025
  6

• ERROR: segmentationPSCBS requires the PSCBS package

  lima1/PureCN#392 · Filter by author ntran95 opened on Jul 10, 2025
  1

• COMSIC VCF

  bug
  lima1/PureCN#380 · Filter by author atimms opened on Jan 10, 2025
  1

  

• Interpreting results

  lima1/PureCN#377 · Filter by author MaryGoAround opened on Oct 11, 2024

• An unknown error happening

  lima1/PureCN#376 · Filter by author MaryGoAround opened on Oct 2, 2024

• No off-target

  lima1/PureCN#375 · Filter by author El84Ja opened on Sep 6, 2024
  3

• A high duplication rate for WGS

  lima1/PureCN#372 · Filter by author MaryGoAround opened on Aug 7, 2024

• PureCN unintentionally filters out reads with supplementary alignments

  lima1/PureCN#371 · Filter by author tinyheero opened on Aug 6, 2024
  3

• Question regrading the results

  lima1/PureCN#368 · Filter by author maxanes opened on May 15, 2024

• allelic copy number for segments

  lima1/PureCN#364 · Filter by author jennyp76 opened on Apr 13, 2024

• WARN [2024-03-12 11:57:13] Could not find valid purity and ploidy solution. Error in results[[1]] : subscript out of bounds

  lima1/PureCN#358 · Filter by author gagank4911 opened on Mar 12, 2024

• Could not find valid purity and ploidy solution

  lima1/PureCN#355 · Filter by author gagank4911 opened on Mar 7, 2024

• HRD score from PureCN outputs

  question
  lima1/PureCN#352 · Filter by author ShvartsmanIrina opened on Feb 29, 2024
  2

• Annotation using different database

  enhancement
  lima1/PureCN#350 · Filter by author jennyp76 opened on Feb 8, 2024
  1

• GATK segmentation might fail when all variants on a chromosome are filtered out.

  buggatk4
  lima1/PureCN#343 · Filter by author lima1 opened on Jan 16, 2024

• Support for non-diploid allosome alterations

  enhancement
  lima1/PureCN#342 · Filter by author lima1 opened on Jan 13, 2024

• Running PureCN with only one normal samples

  bug
  lima1/PureCN#341 · Filter by author sleyn opened on Jan 5, 2024
  1