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1. recopops recopops Public

   A command line program to generate phylogenies and SNP configurations using simulation of coalescent models with structured populations.

   Jupyter Notebook

2. randdisttree randdisttree Public

   A program to generate random trees and SNP configurations by performing hierarchical clustering on random points.

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3. recorandwalk recorandwalk Public

   A simple program to generate coalescent random walks on a lattice.

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4. neattrees neattrees Public

   A custom library for make computations over trees in parent array representation in order to teach myself various algorithms related to trees.

   Python

5. sequencing_tutorial sequencing_tutorial Public

   A quick and dirty tutorial for students about basic sequencing analysis from Illumina reads.

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