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add extra line to BAM csv to test #366

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add extra line to BAM csv to test #366

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d456d5d
add extra line to BAM csv to test
Schiano-NOAA Sep 10, 2026
c92d6b5
change install from devtools to pak
Schiano-NOAA Sep 10, 2026
fe41e25
make change to ss3 csv to initiate update to ex dat
Schiano-NOAA Sep 10, 2026
3867492
chore: update example_data from converter resource changes (triggered…
github-actions[bot] Sep 10, 2026
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2 changes: 1 addition & 1 deletion .github/workflows/update-example-data.yml
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Expand Up @@ -27,7 +27,7 @@ jobs:

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::devtools, any::usethis, local::.
extra-packages: any::pak, any::usethis, local::.

- name: Update example data
run: Rscript data-raw/DATASET.R
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2 changes: 1 addition & 1 deletion data-raw/DATASET.R
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Expand Up @@ -2,7 +2,7 @@
# Path to SS3 output file
EX_REPORT_PATH <- file.path("inst", "extdata", "Report.sso")
# Install stockplotr
devtools::install_local(".")
pak::local_install(".")
# Convert output
example_data <- stockplotr::convert_output(EX_REPORT_PATH)
# Save object as rda into raw_data
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Binary file modified data/example_data.rda
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4 changes: 2 additions & 2 deletions inst/resources/bam_var_names.csv
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Expand Up @@ -194,7 +194,7 @@ t.series,F,fishing_mortality
t.series,F.D,fishing_mortality_discards
t.series,Fsum,total_fishing_mortality
t.series,N,abundance
t.series,recruits,recruitment
t.series,recruits,recruitment_testing_name
t.series,logR.dev,log_recruitment_deviations
t.series,SSB.SSBmsy,sb_sb_msy
t.series,SSB.msst,sb_msst
Expand Down Expand Up @@ -304,7 +304,7 @@ parms,l.f30.knum,landings_f30_numbers
parms,l.f30.mt,landings_f30_weight
parms,msy.mt,msy_weight
parms,ssb.f30,spawning_biomass_f30
projection,b.proj,biomass
projection,b.proj,biomass_testing_name
projection,f.proj,fishing_mortality
projection,l.knum.proj,landings_numbers
projection,l.my.proj,landings_weight
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2 changes: 1 addition & 1 deletion inst/resources/ss3_var_names.csv
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@@ -1,7 +1,7 @@
module_name,label,alt_label
DERIVED_QUANTITIES,SSB_Virgin,spawning_biomass_unfished
DERIVED_QUANTITIES,SSB_Initial,spawning_biomass_initial
DERIVED_QUANTITIES,SSB,spawning_biomass
DERIVED_QUANTITIES,SSB,spawning_biomass_testing_name
DERIVED_QUANTITIES,Recr_Virgin,spawning_biomass
DERIVED_QUANTITIES,Recr_Initial,recruitment_initial
DERIVED_QUANTITIES,Recr,recruitment
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