Fix/atera#169
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Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
The 10x Atera loader (newer spatialdata/zarr) writes image arrays with rectilinear (variable-size) chunk grids, which zarr>=3 disables by default. The process_dataset step failed to read the store, and even when read, only rechunked in the crop branch so uncropped datasets propagated rectilinear chunks into output_sp.zarr and broke downstream benchmark components. - Enable reading rectilinear chunks via zarr.config before sd.read_zarr(). - Run rechunk_sdata() unconditionally before writing so the processed output always has a regular chunk grid. - Add process_datasets_atera_nebius.sh to run the processor on just the Atera dataset, reading the loader output from /scratch/.../raw. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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