fix: enforce QA section boundaries and harden RAG indexing

[rostilos]

• isolate test-case and environment content using explicit sentinels
• replace only shareable QA sections with public preview links
• decouple retained RAG branches from branch-analysis patterns
• make incremental checkpoint reconciliation durable and observable
• allow initial snapshots without custom path filters

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📥 Commits

Reviewing files that changed from the base of the PR and between cfa5049 and 37e7a8e.

📒 Files selected for processing (24)

• frontend
• java-ecosystem/libs/analysis-api/src/main/java/org/rostilos/codecrow/analysisapi/rag/RagOperationsService.java
• java-ecosystem/libs/analysis-engine/src/main/java/org/rostilos/codecrow/analysisengine/processor/analysis/BranchAnalysisProcessor.java
• java-ecosystem/libs/analysis-engine/src/test/java/org/rostilos/codecrow/analysisengine/processor/analysis/BranchAnalysisProcessorTest.java
• java-ecosystem/libs/core/src/main/java/org/rostilos/codecrow/core/model/project/config/RagConfig.java
• java-ecosystem/libs/core/src/main/java/org/rostilos/codecrow/core/service/qadoc/QaDocContentParser.java
• java-ecosystem/libs/core/src/test/java/org/rostilos/codecrow/core/model/project/config/RagConfigTest.java
• java-ecosystem/libs/core/src/test/java/org/rostilos/codecrow/core/service/qadoc/QaDocContentParserTest.java
• java-ecosystem/libs/rag-engine/src/main/java/org/rostilos/codecrow/ragengine/branch/BranchIndexMaintenanceService.java
• java-ecosystem/libs/rag-engine/src/main/java/org/rostilos/codecrow/ragengine/service/RagOperationsServiceImpl.java
• java-ecosystem/libs/rag-engine/src/test/java/org/rostilos/codecrow/ragengine/branch/BranchIndexMaintenanceServiceTest.java
• java-ecosystem/libs/rag-engine/src/test/java/org/rostilos/codecrow/ragengine/service/RagOperationsServiceImplTest.java
• java-ecosystem/services/pipeline-agent/src/main/java/org/rostilos/codecrow/pipelineagent/generic/processor/command/QaDocCommandProcessor.java
• java-ecosystem/services/pipeline-agent/src/main/java/org/rostilos/codecrow/pipelineagent/qadoc/QaAutoDocListener.java
• java-ecosystem/services/pipeline-agent/src/main/java/org/rostilos/codecrow/pipelineagent/qadoc/QaDocHandoffRetryPolicy.java
• java-ecosystem/services/pipeline-agent/src/main/java/org/rostilos/codecrow/pipelineagent/qadoc/QaDocPublicPreviewService.java
• java-ecosystem/services/pipeline-agent/src/test/java/org/rostilos/codecrow/pipelineagent/generic/processor/command/QaDocCommandProcessorTest.java
• java-ecosystem/services/pipeline-agent/src/test/java/org/rostilos/codecrow/pipelineagent/qadoc/QaDocHandoffRetryPolicyTest.java
• java-ecosystem/services/pipeline-agent/src/test/java/org/rostilos/codecrow/pipelineagent/qadoc/QaDocPublicPreviewServiceTest.java
• java-ecosystem/services/web-server/src/main/java/org/rostilos/codecrow/webserver/publicshare/qadoc/QaDocShareProvider.java
• java-ecosystem/services/web-server/src/test/java/org/rostilos/codecrow/webserver/publicshare/qadoc/QaDocShareProviderTest.java
• python-ecosystem/inference-orchestrator/src/service/qa_documentation/qa_doc_orchestrator.py
• python-ecosystem/inference-orchestrator/src/utils/prompts/constants_qa_doc.py
• python-ecosystem/inference-orchestrator/tests/test_qa_documentation.py

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