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Dashboard: data-driven evidence summary + top candidates per pool - #60
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The section's prose was hardcoded and went stale as studies were added: it said every real study was an RNA-seq pathogen challenge after heat, OA and starvation studies landed, and it listed single-study phenotypes as pools with '0 genes measured in both'. Every sentence is now derived from data.json: stressor and assay coverage, only k>=2 pools (with 'at least two studies' for 3-study pools), single-study phenotypes named as awaiting replication, tier counts, caveats that fire only when true, and next curation steps from unharmonized assays, unreplicated phenotypes and QC failures. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
The overall top list is filled by whichever pool has the most studies, so thermal tolerance's replicated candidates never appeared beside disease susceptibility's. The builder now writes the top 5 per phenotype (top_real_by_phenotype / top_simulated_by_phenotype, with cards and gene annotations), and the home page shows one table per k>=2 pool. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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Rewrites the What the evidence says so far section of https://sr320.github.io/AREE/ so that every sentence comes from
data.jsoninstead of hardcoded prose.What was out of date on the live page
What the section now computes
Tested by rendering against the live
data.jsonand against an older local build (10 studies, one pool). Also guarded the CI case with no evidence.Top candidates per pool (second commit)
aree build-dashboardnow also writestop_real_by_phenotype/top_simulated_by_phenotype: the top 5 per phenotype, each with its evidence card and gene annotations.🤖 Generated with Claude Code