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[study] PERUZZA2023_HEATWAVE (PRJNA906528) - #64

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study/PRJNA906528/PERUZZA2023_HEATWAVE
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sr320 wants to merge 2 commits into
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study/PRJNA906528/PERUZZA2023_HEATWAVE

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@sr320

@sr320 sr320 commented Oct 16, 2026

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Claimed by aree start-study on Pori, 2026-10-15. Draft until the run is finished.

Study

  • study_id:
  • Accession(s):
  • Mode: raw_reanalysis / processed_results_harmonization
  • Machine and storage used:

Checklist

  • aree validate-study registry/studies/<STUDY_ID>.yaml passes
  • Sample sheet and FASTQ manifest generated by aree fetch-samplesheet, not hand-written
  • FASTQ MD5s verified against the manifest before the run
  • Workflow manifest(s) committed under data/studies/<STUDY_ID>/, with parameters, tool versions and input checksums
  • Standardized result tables and the HTML report committed; no raw reads, work/ or results/
  • qc_status and analysis_status in the YAML reflect what was actually run
  • Limitations and quality flags record anything that weakens the evidence (replication, phenotype definition, excluded samples)
  • Curation tests in tests/test_<study>_study.py pin the decisions that are easy to erode later
  • No edits to shared code, vocabularies or docs; those went in a separate PR

Curation decisions

sr320 and others added 2 commits October 15, 2026 21:05
…QuantSeq 3' Tag-seq, sex covariate

Second Manila clam heat study; pools with TUCCI2025_HEAT_PRIMING on thermal_tolerance (exposure_only). Independent animals (bought Feb 2021 vs Feb 2022). Sample sheet keeps the 40 RNA-seq runs, not the 39 16S runs. Not yet run.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

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