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@tomotools

tomotools

README.md

Command line tools connecting common cryo-ET workflows.

tomotools:

  • tomogram preprocessing, inlcuding frame alignment, exclusion, alignment and reconstruction.
  • export of tomograms to common picking and STA suites.

subtomotools: scripts to handle .star files, and export of coordinates from tomotwin-cryoet to Warp/M

For feature requests and bugs, feel free to get in touch via Issues or file a PR!

Popular repositories Loading

  1. tomotools tomotools Public

    Scripts to make cryo-electron tomography a bit easier

    Python 15 4

  2. subtomotools subtomotools Public

    Some scripts to facilitate subtomogram-averaging workflows.

    Python

  3. tomotools-testfiles-lfs tomotools-testfiles-lfs Public

    Testfiles for tomotools requiring git-lfs

    Roff

  4. .github .github Public

  5. ArtiaX ArtiaX Public

    Forked from FrangakisLab/ArtiaX

    ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.

    Python

Repositories

Showing 5 of 5 repositories
  • tomotools Public

    Scripts to make cryo-electron tomography a bit easier

    tomotools/tomotools's past year of commit activity
    Python 15 GPL-2.0 4 4 (1 issue needs help) 2 Updated Oct 2, 2026
  • ArtiaX Public Forked from FrangakisLab/ArtiaX

    ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.

    tomotools/ArtiaX's past year of commit activity
    Python 0 GPL-3.0 13 0 1 Updated Mar 16, 2026
  • subtomotools Public

    Some scripts to facilitate subtomogram-averaging workflows.

    tomotools/subtomotools's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 13, 2025
  • .github Public
    tomotools/.github's past year of commit activity
    0 0 0 0 Updated Apr 26, 2024
  • tomotools-testfiles-lfs Public

    Testfiles for tomotools requiring git-lfs

    tomotools/tomotools-testfiles-lfs's past year of commit activity
    Roff 0 0 0 0 Updated Feb 9, 2024

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