ImageJ macros and scripts written at the imaging facility MRI
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Updated
Jul 23, 2026 - Jupyter Notebook
ImageJ macros and scripts written at the imaging facility MRI
quantixed FIJI update site
A repository for some tools providing features that are external to Aivia, such as: complex image montage, LUT color mapping creation, etc.
Custom software written for analysis of spatial proteomics data from fetal lung acquired in the HDCA project.
ImageJ / FIJI script to analyse picrosirius red stained sections imaged under polarising light
(CS F266) An ImageJ macro for Quantitative Analysis of OCTA images.
Helper scripts and macros using BoneJ
Fiji/ImageJ plugin with a Jython GUI for four-channel microscopy preprocessing, channel-3 segmentation, ROI-guided cell detection, and per-cell multichannel quantification.
ImageJ / FIJI script to analyse picrosirius red stained sections imaged under transmitted light
Compilation of ImageJ macros to do a wide variety of functions.
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