pharmaverse

ADaM in R Asset Library

List of Open-Source in New Drug Applications NDAs FDA

Compact Package Representations

Workshop - Clinical Tables in R with gt

Lightweight RTF composer for Python. Specializes in precise formatting of production-quality tables and figures.

Python for Clinical Study Reports and Submission

Your Friendly Guide to Clinical Data Science with R in Open-Source

Home of the Pharma DevOps Working Group, providing everything you need for R and Python codebases used for clinical reporting

Pack and unpack source projects of any programming language into portable text files

Open-source Clinical Study Report builder: pharmaverse ARD-based TFLs + text library + report templates, with agentic assistance and end-to-end traceability

R in Pharma 2024 workshops

Interactive learnr tutorials for clinical R programmers transitioning from SAS to the pharmaverse ecosystem (dplyr, admiral, sdtm.oak, metacore, xportr, teal and more). Built on real CDISC CDISCPILOT01 data.

Hands-on learnr tutorial covering CDISC Analysis Results Standard v1.0 — from annotated shells to ARM-TS JSON, with live exercises on real pharmaverse datasets.

An abbreviated clinical study report built with Quarto, rendered to branded Typst PDF and HTML from pharmaverse ADaM data.

Interactive learnr tutorial covering cards and cardx R packages, model tidying (broom/parameters), and CDISC ARS validation.

Alzheimer's Disease Essay Simulation with Pharmaverse

Independent CDISC mapping of a real published RCT — SDTM → ADaM → TLG in R, built from a wide non-CDISC source extract. Every mapping decision documented; 38 validation checks against raw. sdtm.oak · admiral · xportr

Python R Hybrid clinical trial machine learning project for clinical development using CDISC-aligned data, SDTM/ADaM workflows, safety analytics, endpoint modeling, and survival analysis

Official GitHub for PharmaSUG SDE 2024! Thank you all for coming!

End-to-end CDISC SDTM→ADaM→TLF replication of the FDA CDISC Pilot study - parallel R (admiral/pharmaverse) + SAS 9.4, define.xml v2.0, reproducible in ~20s behind a 745-expectation testthat suite.