Issues

• data_generator.py

  uci-cbcl/UFold#40 · Filter by author festla opened on May 17, 2025
  1

• Underscore in predicted dot-bracket

  uci-cbcl/UFold#39 · Filter by author AdithyaViswanathan1 opened on Apr 29, 2025

• Importing RNA_SS_data into ufold_train.py

  uci-cbcl/UFold#36 · Filter by author charlottem-rna opened on Nov 24, 2024

• Inhomogeneous arrays from data_generator.py

  uci-cbcl/UFold#35 · Filter by author charlottem-rna opened on Nov 22, 2024
  1

• ufold_test.py error on clean install on Ubuntu 22.04.4 LTS

  uci-cbcl/UFold#34 · Filter by author alevitan-cajal opened on Jul 12, 2024

• I just provide the sequence fasta file, so how to skip "[Pdb]" input

  uci-cbcl/UFold#33 · Filter by author DooYal opened on Jun 6, 2024
  2

• Asking for training set of RNAStrAlign

  uci-cbcl/UFold#32 · Filter by author heqin-zhu opened on May 1, 2024
  1

• CPU version

  uci-cbcl/UFold#31 · Filter by author dweemx opened on Jan 17, 2024
  2

• the data/input.txt is missing

  uci-cbcl/UFold#29 · Filter by author siduanmiao opened on Sep 21, 2023

• web server is down

  uci-cbcl/UFold#26 · Filter by author enc-kcotto opened on Apr 25, 2023
  7

• incompatible packages specified in the UFold.yml

  uci-cbcl/UFold#25 · Filter by author coffeebond opened on Mar 10, 2023
  5

• got error when processing training data

  uci-cbcl/UFold#24 · Filter by author sindax123 opened on Dec 25, 2022
  5

• AttributeError when training data

  uci-cbcl/UFold#23 · Filter by author laiyii opened on Dec 19, 2022
  4

• Having trouble installing on MacOS

  uci-cbcl/UFold#22 · Filter by author nlabrad opened on Nov 10, 2022
  1

• ss_label dimension

  uci-cbcl/UFold#21 · Filter by author CatIIIIIIII opened on Oct 14, 2022
  2

• RuntimeError: cuDNN error: CUDNN_STATUS_EXECUTION_FAILED

  uci-cbcl/UFold#20 · Filter by author sfsdfd62 opened on Oct 1, 2022
  2

• model.eval() mode

  uci-cbcl/UFold#18 · Filter by author giorgiobini opened on Sep 27, 2022
  1

• This error pops up when I tried to run Ufold

  uci-cbcl/UFold#16 · Filter by author sfsdfd62 opened on Sep 24, 2022
  1

• Batch with different rna length

  uci-cbcl/UFold#15 · Filter by author giorgiobini opened on Sep 20, 2022
  2

• How can I generate the training datasets?

  uci-cbcl/UFold#14 · Filter by author llfzllfz opened on Sep 19, 2022
  1

• Why /ufold/config.json not have test attribute?

  uci-cbcl/UFold#13 · Filter by author llfzllfz opened on Sep 18, 2022
  1

• Training datasets

  uci-cbcl/UFold#11 · Filter by author andrewj-jung opened on May 20, 2022
  11

• length RNA

  uci-cbcl/UFold#10 · Filter by author mtinti opened on Apr 11, 2022
  2

• Running on CPU

  uci-cbcl/UFold#9 · Filter by author rkruegs123 opened on Apr 8, 2022
  2

• model for prediction

  uci-cbcl/UFold#8 · Filter by author mtinti opened on Apr 8, 2022
  2