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Conflicting Instructions Between Tutorial and Journal Article #37

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@DarioS

Read Me:

Image preprocessing: See the paper for details.

Journal article:

all datasets were resampled to 0.5 microns per pixel (mpp) using nearest-neighbor interpolation and without anti-aliasing.

Tutorial:

mpp = ds["image"].attrs["mpp"]
deepcell_types.predict(img, mask, chnames, mpp, model_name=model, device_num=device, num_workers=num_data_loader_threads)

So, should one up-sample their imaging mass cytometry image or should they specify mpp as a parameter? Surely not both.

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