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Migrate AnalysisCard.svelte off raw Tailwind palette onto design tokens

enhancementNew feature or requestNew feature or request

Status: Open.

#223 In veg/datamonkey3;

· stevenweaver opened on Sep 17, 2026

Regenerate stale Storybook DesignTokens story from real tokens

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#222 In veg/datamonkey3;

· stevenweaver opened on Sep 17, 2026

Backend analysis failures surface generic 'unable to read results file' instead of the real HyPhy error

Status: Open.

#220 In veg/datamonkey3;

· stevenweaver opened on Sep 11, 2026

Destructive and background failures use alert() or say nothing at all

Status: Open.

#211 In veg/datamonkey3;

· stevenweaver opened on Aug 13, 2026

An uploaded tree whose labels do not match the alignment is accepted silently and fails at run time

Status: Open.

#210 In veg/datamonkey3;

· stevenweaver opened on Aug 13, 2026

The improved stop-codon report is on a path those files cannot reach

Status: Open.

#206 In veg/datamonkey3;

· stevenweaver opened on Aug 12, 2026

A cancelled local analysis un-cancels itself and reports as completed

Status: Open.

#201 In veg/datamonkey3;

· stevenweaver opened on Aug 12, 2026

Diagnose the not-codon-aligned failure properly — describe it, do not offer to repair it

Status: Open.

#199 In veg/datamonkey3;

· stevenweaver opened on Aug 12, 2026

Return visits look like data loss — and the obvious fix silently narrows the Results history

Status: Open.

#196 In veg/datamonkey3;

· stevenweaver opened on Aug 11, 2026

Branch options "Custom" and "Unlabeled" are rejected by HyPhy after a full model fit

Status: Open.

#192 In veg/datamonkey3;

· stevenweaver opened on Aug 11, 2026

Let users supply their own tree, and tag branches on the tree they actually chose

Status: Open.

#191 In veg/datamonkey3;

· stevenweaver opened on Aug 11, 2026

onMount: a permanent dead spinner on first visit, and a lost file on every return visit

Status: Open.

#190 In veg/datamonkey3;

· stevenweaver opened on Aug 11, 2026