[HouMinXi]

Scope

Follow-up to the baseline debt intentionally retained by #105 / #323 (both historical; this does not reopen or close #105). One debt-focused PR, separate from the baseline-test and diagnostic behavior repairs.

• Ruff 0.17.3: 197 findings across 69 files → 0; 145 files needing formatting → 0 (783 checked files now formatted).
• Preserve Ruff rules, exclusions, dependency pin, workflow check identity, action pins and permissions. Upgrade the existing lint job from changed-file checks to python scripts/lint_changed.py --all; retain --base for local convenience.
• Formatter tranche: 142 Python files AST-equivalent; 16 changed Python fences in 3 Markdown files AST-equivalent with surrounding prose unchanged.
• Audit lint changes individually: unused imports, explicit Optional/zip semantics, mapping iteration, ordered incremental list extension, error chaining and test cleanups. Final full delta has 135 AST-unchanged Python files, 51 explicitly audited AST-changed Python files, and 5 non-Python files.
• 62 new/changed line-local suppression sites have contract reasons: deliberate error/quarantine boundaries, existing ValueError APIs, review-pass-name false positives, noncrypto sampling, executable hooks, intentional Semgrep source fixtures, and validated HTTP(S) requests. No blanket rule disabling or broader excludes.

Deliberate behavior details (not a pure-format claim)

Provider probes now refuse non-HTTP(S) URLs before request construction; five no-I/O regression cases cover this. Existing successful HTTP probe tests remain. Exception causes become explicit; test failure assertions remain active under -O; async test filesystem checks use a worker thread. Git SHA1 object hashes are unchanged and explicitly marked non-security. Intentional taint-fixture AST and ruleid/ok adjacency are unchanged; vulnerable example functions were never executed.

Validation and review

• python scripts/lint_changed.py --all: all checks passed; 783 files already formatted.
• git diff --check: clean.
• Integrated owner supported/affected selection: 948 passed (capacity reporting, uncertainty basis, factories, and the original four targeted modules). Original owner targeted run: 148 passed (lint helper/workflow, provider, projection compatibility, baseline advisory tests).
• Independent selected runs: 211 passed / 1 skipped; 515 passed / 3 skipped / 3 baseline failures; 359 passed / 3 same baseline failures. These overlap and are not summed as unique coverage.
• The 3 fixed projection-oracle failures reproduce identically on base 2995c41 and remain in their separate repair scope.
• Three sequential five-lens reviews completed (independent security/correctness + quality, owner deslop + blast-radius + manual CE-style contract/evidence review), followed by fresh independent requirements acceptance. No formal CE engine is claimed.

Explicit local aggregate limit

The full run collected 31,625 tests but was stopped at about 19% after concurrent shared-worktree Git-config changes made it unsuitable as a pristine aggregate gate. The partial log is diagnostic evidence, not a full-suite pass. Four fixval failures reproduced on both head and exact base; one depends on the sandbox's read-only /tmp/.git marker. Invocation-audit profile tests also fail on both head/base because this local filesystem is overlayfs while the unchanged recorder explicitly requires ext4/btrfs. The invocation source and test files have no diff. Paired module runs have identical 1,139 failing/error test IDs: each has 189 failures, 950 setup errors and 31 passes; no head-only failure/error. At PR creation, hosted CI qualification was pending. It has now completed successfully on the exact reviewed commit; see the hosted results below. The interrupted local run is still not claimed as a full local pass.

Integration with current main

Main advanced through #346 while publication awaited the narrowly requested workflow authorization. This branch preserves every intervening Phase 7 file byte-for-byte. The sole overlap, tests/test_provider_capacity_reporting.py, was already formatted on main, so its formatting-only change drops out. All remaining 191 per-file patches are byte-identical to the originally reviewed debt delta; there are no new scoped paths. Independent integration review and fresh acceptance recheck passed; full-tree Ruff remains clean.

Local Phase 7 offline-fixture tests encounter a sandbox-specific read-only /tmp/.git ancestor, causing unchanged gate discovery to attempt subprocess execution forbidden by those tests. The first failure/error pair reproduced identically on exact new base ef5ef54; repeated unsupported groups were stopped rather than misrepresented as a pass. No fixture, protected marker, production code or CI selector was weakened to bypass this limitation. Hosted CI has now qualified these groups on its supported runner.

Review anchor: de674a93555462d20ce8c79e79257913689963f2 against ef5ef54f0f280535554716b5e9aaabeef6e652b0; integrated binary patch SHA256 189e61e1ad619c2d250ab1630356d53aef0407bc4f5257eca3204e4586fe3433. Original reviewed anchor: d1991e623ae7a1f9f850ebff0ffcc58d1cfb67e5 against 2995c41e23a700aa6ed72306217ce3385b6550c1.

Hosted CI — verified 2026-11-01 13:06 UTC

Exact head de674a93555462d20ce8c79e79257913689963f2: all checks completed successfully (Linux tests, full-tree lint, CodeQL/Analyze Python).

Linux run 41306058847:

• Ownership/cancellation: 568 passed, zero skips in this required phase.
• Cgroup-backed sandbox: 32 passed.
• Full service-free selection: 31,520 passed, 81 skipped, 68 deselected, 2 subtests passed in 38m09s. Existing CI selections/exclusions were not broadened by this PR.
• Local process integration: 11 passed, 7 deselected.

At the completion of PR CI, this PR was still Draft, open and unmerged. It was subsequently marked ready and merged after explicit PR-specific user authorization; see the lifecycle record below.

Authorized merge and cleanup — 2026-11-01 13:25 UTC

Merged as 7851ee8be2d6488a00d34d75ad1663e86fa32e63 after fresh exact-head checks. The actual merge tree 7b0d21c7921879c2ed98f94be04bba1ff61f17cb is identical to the fully validated PR head; parents are ef5ef54 and de674a9. The exact remote branch fix/105-ruff-debt-20261101 was deleted by ordinary Git transport and verified absent. Post-merge Linux/CodeQL push checks are being monitored separately.

[qodo-code-review]

PR Summary by Qodo

Clear Ruff debt and enforce full-repository lint in CI

⚙️ Configuration changes ✨ Enhancement 🧪 Tests 📝 Documentation 🕐 40+ Minutes

AI Description

• Clear retained Ruff lint and formatting debt across source, tests, and Python documentation
 examples.
• Make CI check the entire repository while retaining diff-scoped checks for local use.
• Document intentional suppressions and test provider probes against non-HTTP(S) URLs.

Diagram

graph TD
  CI["Lint workflow"] --> Helper["Lint helper"] --> Ruff["Pinned Ruff"] --> Tree["Repository tree"]
  Local["Local developer"] -->|--base option| Helper
  Ruff -->|check and format| Tree

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High-Level Assessment

Keep the existing lint helper and workflow identity. Adding full-tree selection to that helper reuses its pinned-version lookup, exclusions, and check commands without duplicating them in CI; retaining --base preserves the faster local workflow.

Files changed (191) +11065 / -5839

Enhancement (1) +8 / -8

lint_changed.pyAdd a full-tree lint mode +8/-8

Add a full-tree lint mode

• Adds mutually exclusive --all selection while preserving --base and the existing Ruff check commands.

scripts/lint_changed.py

Bug fix (1) +211 / -178

forge-provider.pyValidate provider probe schemes +211/-178

Validate provider probe schemes

• Rejects non-HTTP(S) probe URLs before request construction, documents validated requests, and formats the provider tool.

scripts/forge-provider.py

Refactor (59) +3130 / -2614

convert_historical.pyClean historical conversion script +146/-138

Clean historical conversion script

• Formats the converter and resolves retained Ruff findings.

bootstrap/convert_historical.py

base.pyClean adapter base +3/-5

Clean adapter base

• Resolves lint findings and applies Ruff formatting.

cli/adapters/base.py

ci_log.pyFormat CI-log adapter +19/-19

Format CI-log adapter

• Applies Ruff formatting to CI-log adapter code.

cli/adapters/ci_log.py

git_log.pyClean Git-log adapter +36/-39

Clean Git-log adapter

• Formats Git-log parsing and resolves Ruff findings.

cli/adapters/git_log.py

github_pr.pyClean GitHub PR adapter +37/-41

Clean GitHub PR adapter

• Formats PR adapter code and resolves Ruff findings.

cli/adapters/github_pr.py

dimension_manager.pyClean dimension management +304/-299

Clean dimension management

• Formats dimension-management code and documents an intentional backend-error boundary.

cli/dimension_manager.py

escalation.pyFormat escalation logic +82/-84

Format escalation logic

• Applies Ruff formatting to escalation handling.

cli/escalation.py

file_utils.pyClean CLI file utilities +6/-6

Clean CLI file utilities

• Resolves Ruff findings and formats file utilities.

cli/file_utils.py

forge_cli.pyClean the main CLI +717/-823

Clean the main CLI

• Formats CLI flows and annotates intentional shared state, sampling, and exception boundaries.

cli/forge_cli.py

gap_detector.pyClean gap detection +114/-96

Clean gap detection

• Formats gap-detection code and resolves Ruff findings.

cli/gap_detector.py

gap_manager.pyClean gap management +243/-296

Clean gap management

• Formats gap-management code and explains its CLI backend-error diagnostic boundary.

cli/gap_manager.py

llm_parser.pyClean LLM parser +16/-19

Clean LLM parser

• Resolves Ruff findings and formats parser code.

cli/llm_parser.py

migration.pyClean migration CLI +61/-36

Clean migration CLI

• Formats migration handling and resolves Ruff findings.

cli/migration.py

analyse_arms.pyClean arm-analysis script +41/-39

Clean arm-analysis script

• Formats analysis code and resolves retained lint findings.

scripts/analyse_arms.py

dump_calibration_candidates.pyClean calibration candidate dumper +28/-22

Clean calibration candidate dumper

• Formats the candidate export script and resolves lint findings.

scripts/dump_calibration_candidates.py

freeze_calibration_labels.pyClean label-freezing script +163/-73

Clean label-freezing script

• Formats calibration-label processing and resolves Ruff findings.

scripts/freeze_calibration_labels.py

replay_survivors.pyClean survivor replay script +2/-3

Clean survivor replay script

• Resolves lint findings in the replay utility.

scripts/replay_survivors.py

run_ablation_off.pyClean ablation runner +55/-19

Clean ablation runner

• Formats ablation execution and resolves Ruff findings.

scripts/run_ablation_off.py

run_falsify_calibration.pyClean falsification calibration runner +90/-47

Clean falsification calibration runner

• Formats calibration execution and resolves Ruff findings.

scripts/run_falsify_calibration.py

_gate_pytest.pyClean gate pytest helper +1/-0

Clean gate pytest helper

• Resolves a lint finding in the pytest gate helper.

src/code_forge/_gate_pytest.py

_mutation_process.pyClean mutation process handling +11/-5

Clean mutation process handling

• Formats process handling and clarifies its cancellation-diagnostic exception boundary.

src/code_forge/_mutation_process.py

backend.pyExplain optional cache failures +1/-1

Explain optional cache failures

• Annotates the broad cache-read exception boundary as an intentional cache miss.

src/code_forge/backend.py

baseline_guard.pyClean baseline guard +16/-8

Clean baseline guard

• Formats baseline checks and resolves Ruff findings.

src/code_forge/baseline_guard.py

context_sources.pyClean context source clients +32/-17

Clean context source clients

• Formats source adapters and documents the existing HTTP(S) restriction around knowledge requests.

src/code_forge/context_sources.py

conventions.pyClean convention scanning +124/-66

Clean convention scanning

• Formats convention extraction and resolves lint findings.

src/code_forge/conventions.py

conventions_resolver.pyClean convention resolution +182/-89

Clean convention resolution

• Formats source resolution and simplifies ordered list extension while clearing lint findings.

src/code_forge/conventions_resolver.py

coverage.pyClean coverage handling +4/-2

Clean coverage handling

• Resolves Ruff findings and formats coverage code.

src/code_forge/coverage.py

cross_repo.pyExplain cross-repo worker failures +4/-2

Explain cross-repo worker failures

• Documents the intentional broad backend-error boundary in cross-repository fan-out.

src/code_forge/cross_repo.py

cross_repo_impact.pyClean cross-repo impact analysis +4/-2

Clean cross-repo impact analysis

• Resolves lint findings and formats impact-analysis code.

src/code_forge/cross_repo_impact.py

dead_code.pyExplain conservative detector failure +1/-1

Explain conservative detector failure

• Documents why a detector exception treats a call site as live.

src/code_forge/dead_code.py

detect.pyClean detection code +2/-2

Clean detection code

• Resolves Ruff findings in detection handling.

src/code_forge/detect.py

diff_grouping.pyPreserve grouping validation errors +5/-6

Preserve grouping validation errors

• Documents intentional ValueError contracts for malformed grouping configuration.

src/code_forge/diff_grouping.py

doctor.pyClean doctor diagnostics +11/-4

Clean doctor diagnostics

• Formats diagnostic handling and preserves its fail-closed identity boundary.

src/code_forge/doctor.py

e2e_check.pyClean end-to-end checks +2/-2

Clean end-to-end checks

• Resolves Ruff findings in end-to-end check handling.

src/code_forge/e2e_check.py

env_resolver.pyClean environment resolution +2/-2

Clean environment resolution

• Resolves Ruff findings in environment resolution.

src/code_forge/env_resolver.py

corpus.pyPreserve corpus validation API +2/-2

Preserve corpus validation API

• Documents intentional ValueError responses to malformed corpus entries.

src/code_forge/eval/corpus.py

ledger_jsonl.pyClean evaluation ledger +1/-1

Clean evaluation ledger

• Resolves a lint finding in JSONL ledger handling.

src/code_forge/eval/ledger_jsonl.py

pool.pyExplain replay error capture +2/-2

Explain replay error capture

• Documents why per-replay backend failures become batch error results.

src/code_forge/eval/pool.py

runner.pyFormat evaluation Git setup +17/-2

Format evaluation Git setup

• Formats Git setup argument lists in the evaluation runner.

src/code_forge/eval/runner.py

swebench.pyDocument deterministic sampling +1/-1

Document deterministic sampling

• Marks the seeded pseudorandom generator as non-security sampling.

src/code_forge/eval/swebench.py

gate_check.pyClean trusted gate checks +74/-23

Clean trusted gate checks

• Formats gate loading and validation flows and resolves lint findings.

src/code_forge/gate_check.py

hold.pyClean hold handling +2/-2

Clean hold handling

• Resolves Ruff findings in hold handling.

src/code_forge/hold.py

install_hooks.pyExplain hook installation exceptions +4/-4

Explain hook installation exceptions

• Documents executable hook permissions and CLI-level installation error handling.

src/code_forge/install_hooks.py

kernel_context.pyFormat kernel context +8/-8

Format kernel context

• Applies Ruff formatting to kernel-context code.

src/code_forge/kernel_context.py

ledger.pyClean ledger root discovery +27/-7

Clean ledger root discovery

• Formats ledger handling and documents its best-effort root fallback.

src/code_forge/ledger.py

legacy.pyExplain legacy adapter errors +1/-1

Explain legacy adapter errors

• Documents the adapter boundary that records exceptions as infrastructure failures.

src/code_forge/legacy.py

lock.pyFormat lock handling +6/-6

Format lock handling

• Applies Ruff formatting to locking code.

src/code_forge/lock.py

mutation.pyClean mutation execution +187/-69

Clean mutation execution

• Formats mutation flows and documents exception handling needed to retain cancellation and cleanup evidence.

src/code_forge/mutation.py

mutation_findings.pyFormat mutation finding validation +155/-59

Format mutation finding validation

• Formats carrier validation, survivor details, and review-context handling.

src/code_forge/mutation_findings.py

shellcheck.pyClean ShellCheck parser +4/-2

Clean ShellCheck parser

• Resolves Ruff findings and formats parsing code.

src/code_forge/parsers/shellcheck.py

progress.pyExplain best-effort progress state +2/-2

Explain best-effort progress state

• Documents shared timer state and why progress-output failures must not stop a review.

src/code_forge/progress.py

registry.pyPreserve registry validation errors +2/-2

Preserve registry validation errors

• Documents ValueError contracts for malformed tool registry mappings.

src/code_forge/registry.py

report_presentation.pyClean report presentation +31/-74

Clean report presentation

• Formats report presentation and resolves retained lint findings.

src/code_forge/report_presentation.py

report_projection.pyExplain finding quarantine boundaries +14/-14

Explain finding quarantine boundaries

• Documents broad exception handling required when projecting malformed finding objects.

src/code_forge/report_projection.py

reporter.pyClean report generation +6/-8

Clean report generation

• Formats report generation and resolves Ruff findings.

src/code_forge/reporter.py

rulepack.pyExplain optional rule metadata +9/-4

Explain optional rule metadata

• Formats rulepack handling and documents why metadata failures do not discard findings.

src/code_forge/rulepack.py

sarif.pyClean SARIF generation +4/-3

Clean SARIF generation

• Resolves lint findings and formats SARIF handling.

src/code_forge/sarif.py

setup_mcp.pyExplain trust-recording failure +1/-1

Explain trust-recording failure

• Documents the optional trust-recording error boundary after configuration writes.

src/code_forge/setup_mcp.py

taint.pyClean taint analysis +5/-4

Clean taint analysis

• Formats taint handling and resolves Ruff findings.

src/code_forge/taint.py

Documentation (4) +125 / -71

CONTRIBUTING.mdDocument the full-tree Ruff gate +22/-12

Document the full-tree Ruff gate

• Replaces the debt-era guidance with full-tree and local diff-check instructions and a policy for justified line-local suppressions.

CONTRIBUTING.md

reviewer-canary-spec.mdFormat canary Python examples +9/-12

Format canary Python examples

• Formats Python code fences without changing the surrounding design prose.

docs/design/reviewer-canary-spec.md

59-PATTERNS.mdFormat judgment-pattern examples +75/-38

Format judgment-pattern examples

• Applies Ruff formatting to embedded Python examples.

docs/gsd/phases/59-judgment-and-evidence/59-PATTERNS.md

59-RESEARCH.mdFormat research examples +19/-9

Format research examples

• Applies Ruff formatting to embedded Python signatures.

docs/gsd/phases/59-judgment-and-evidence/59-RESEARCH.md

Other (126) +7591 / -2968

lint-changed.ymlGate the full repository in CI +4/-6

Gate the full repository in CI

• Invokes the existing lint helper with --all instead of selecting pull-request files; retains the workflow identity.

.github/workflows/lint-changed.yml

conftest.pyClean root pytest configuration +1/-0

Clean root pytest configuration

• Resolves a lint finding in the root test configuration.

conftest.py

conftest.pyClean shared pytest fixtures +2/-1

Clean shared pytest fixtures

• Resolves lint findings in shared test setup.

tests/conftest.py

mutation_result_fixture.pyClean mutation result fixtures +16/-3

Clean mutation result fixtures

• Formats shared mutation-result fixture construction.

tests/mutation_result_fixture.py

run_seed_tests.pyClean seed-test runner +1/-1

Clean seed-test runner

• Resolves a Ruff finding in the seed-test utility.

tests/seed_tests/run_seed_tests.py

test_arm_env_propagation.pyClean arm environment tests +4/-2

Clean arm environment tests

• Resolves Ruff findings in environment propagation assertions.

tests/test_arm_env_propagation.py

test_baseline_diagnostics.pyFormat baseline diagnostic tests +187/-60

Format baseline diagnostic tests

• Formats fixtures and assertions for baseline diagnostics.

tests/test_baseline_diagnostics.py

test_baseline_env_retry_record.pyClean baseline retry tests +53/-14

Clean baseline retry tests

• Formats retry-record tests and documents intentional pytest fixture-name reuse.

tests/test_baseline_env_retry_record.py

test_baseline_failure_causes.pyFormat baseline failure-cause tests +26/-8

Format baseline failure-cause tests

• Formats assertions and runner fixtures without changing the tested failure cases.

tests/test_baseline_failure_causes.py

test_baseline_guard.pyFormat baseline guard tests +133/-51

Format baseline guard tests

• Formats baseline guard fixtures and assertions.

tests/test_baseline_guard.py

test_baseline_ignored_exceptions.pyFormat ignored-exception tests +8/-8

Format ignored-exception tests

• Applies Ruff formatting to baseline exception tests.

tests/test_baseline_ignored_exceptions.py

test_baseline_ref_pinning.pyFormat baseline ref-pinning tests +196/-69

Format baseline ref-pinning tests

• Formats ref-pinning fixtures and assertions.

tests/test_baseline_ref_pinning.py

test_baseline_venv_runner_gate.pyFormat baseline virtualenv tests +12/-6

Format baseline virtualenv tests

• Formats virtualenv runner gate assertions.

tests/test_baseline_venv_runner_gate.py

test_calibration_tools.pyClean calibration tool tests +2/-2

Clean calibration tool tests

• Resolves Ruff findings in calibration tests.

tests/test_calibration_tools.py

test_canary_gen.pyClean canary generation tests +11/-7

Clean canary generation tests

• Formats canary fixtures and clears lint findings.

tests/test_canary_gen.py

test_canary_smoke.pyExplain canary runner failures +1/-1

Explain canary runner failures

• Documents the test boundary that converts runner exceptions into diagnostics.

tests/test_canary_smoke.py

test_child_sigint_reset.pyClean child SIGINT tests +3/-1

Clean child SIGINT tests

• Resolves Ruff findings in signal-reset tests.

tests/test_child_sigint_reset.py

test_cli_eval.pyClean CLI evaluation tests +2/-2

Clean CLI evaluation tests

• Resolves lint findings in CLI evaluation assertions.

tests/test_cli_eval.py

test_cli_failure_contract.pyFormat CLI failure-contract tests +85/-14

Format CLI failure-contract tests

• Formats failure fixtures and assertions and clears lint findings.

tests/test_cli_failure_contract.py

test_cli_head_diff_machine_options.pyClean CLI machine-option tests +6/-2

Clean CLI machine-option tests

• Formats machine-option assertions and clears lint findings.

tests/test_cli_head_diff_machine_options.py

test_cli_integration.pyFormat CLI integration tests +29/-9

Format CLI integration tests

• Formats integration fixtures and assertions.

tests/test_cli_integration.py

test_cli_large_prompt.pyFormat large-prompt CLI tests +25/-9

Format large-prompt CLI tests

• Formats prompt fixtures and assertions.

tests/test_cli_large_prompt.py

test_cli_lenses.pyClean CLI lens tests +1/-2

Clean CLI lens tests

• Resolves Ruff findings in lens integration tests.

tests/test_cli_lenses.py

test_cli_sarif.pyClean CLI SARIF tests +1/-1

Clean CLI SARIF tests

• Resolves a lint finding in SARIF CLI tests.

tests/test_cli_sarif.py

test_cli_stdin_isolation.pyClean stdin-isolation tests +6/-2

Clean stdin-isolation tests

• Formats CLI stdin-isolation assertions.

tests/test_cli_stdin_isolation.py

test_conftest_sigint_disposition.pyClean pytest signal tests +10/-3

Clean pytest signal tests

• Formats assertions about pytest SIGINT disposition.

tests/test_conftest_sigint_disposition.py

test_context_sources.pyFormat context source tests +31/-12

Format context source tests

• Formats context-source fixtures and assertions.

tests/test_context_sources.py

test_context_sources_db_uri_paths.pyFormat context-source URI tests +57/-22

Format context-source URI tests

• Formats database URI-path fixtures and assertions.

tests/test_context_sources_db_uri_paths.py

test_contract_flag.pyClean contract-flag tests +1/-1

Clean contract-flag tests

• Resolves a lint finding in contract-flag tests.

tests/test_contract_flag.py

test_conventions.pyFormat convention tests +64/-59

Format convention tests

• Formats convention extraction fixtures and assertions.

tests/test_conventions.py

test_conventions_resolver.pyFormat convention resolver tests +1253/-540

Format convention resolver tests

• Applies Ruff formatting throughout the extensive resolver test suite.

tests/test_conventions_resolver.py

test_cross_repo_impact_db_uri_paths.pyFormat cross-repo URI tests +127/-61

Format cross-repo URI tests

• Formats impact-analysis database URI-path tests.

tests/test_cross_repo_impact_db_uri_paths.py

test_deleted_scope_consumers.pyClean deleted-scope tests +3/-1

Clean deleted-scope tests

• Resolves lint findings in deleted-scope consumer tests.

tests/test_deleted_scope_consumers.py

test_dispo06_revert.pyFormat disposition revert tests +3/-3

Format disposition revert tests

• Applies Ruff formatting to revert assertions.

tests/test_dispo06_revert.py

test_doctor.pyFormat doctor tests +100/-46

Format doctor tests

• Formats doctor diagnostic fixtures and assertions.

tests/test_doctor.py

test_encoding_conformance.pyClean encoding conformance tests +9/-3

Clean encoding conformance tests

• Formats encoding assertions and clears lint findings.

tests/test_encoding_conformance.py

test_eval_build_corpus.pyDocument corpus sampling +1/-1

Document corpus sampling

• Marks deterministic test shuffling as non-security randomness.

tests/test_eval_build_corpus.py

test_eval_harness_failures.pyFormat evaluation failure tests +23/-5

Format evaluation failure tests

• Formats harness-failure fixtures and assertions.

tests/test_eval_harness_failures.py

test_eval_runner.pyFormat evaluation runner tests +23/-17

Format evaluation runner tests

• Formats runner fixtures and clears lint findings.

tests/test_eval_runner.py

test_excerpt_assessment.pyFormat excerpt assessment tests +28/-4

Format excerpt assessment tests

• Formats excerpt-assessment fixtures and assertions.

tests/test_excerpt_assessment.py

test_falsify_protocol_error.pyClean falsifier protocol tests +6/-4

Clean falsifier protocol tests

• Formats protocol-error assertions and clears lint findings.

tests/test_falsify_protocol_error.py

test_falsify_sees_diff.pyExplain falsifier test boundary +18/-18

Explain falsifier test boundary

• Formats diff-visibility tests and documents a pre-dispatch exception boundary.

tests/test_falsify_sees_diff.py

test_finding_severity.pyClarify review-pass fixture name +1/-1

Clarify review-pass fixture name

• Documents that pass_name is a review identifier, not a password.

tests/test_finding_severity.py

test_fingerprint_stability.pyClean fingerprint tests +1/-1

Clean fingerprint tests

• Resolves a lint finding in fingerprint stability tests.

tests/test_fingerprint_stability.py

test_focus.pyClean focus tests +2/-2

Clean focus tests

• Resolves Ruff findings in focus tests.

tests/test_focus.py

test_forge_provider.pyCover provider scheme rejection +101/-68

Cover provider scheme rejection

• Adds no-I/O cases for non-HTTP(S) provider probes alongside formatting of provider tests.

tests/test_forge_provider.py

test_git_ceiling_isolation.pyFormat Git-ceiling tests +49/-18

Format Git-ceiling tests

• Formats Git-ceiling isolation fixtures and assertions.

tests/test_git_ceiling_isolation.py

test_git_diff_line_boundaries.pyFormat Git diff-boundary tests +29/-15

Format Git diff-boundary tests

• Formats line-boundary fixtures and assertions.

tests/test_git_diff_line_boundaries.py

test_git_snapshot_guard.pyFormat Git snapshot tests +133/-20

Format Git snapshot tests

• Formats snapshot-guard fixtures and assertions.

tests/test_git_snapshot_guard.py

test_graph_triage.pyClean graph triage tests +11/-8

Clean graph triage tests

• Formats graph-triage assertions and clears lint findings.

tests/test_graph_triage.py

test_graph_triage_db_uri_paths.pyFormat graph URI-path tests +16/-5

Format graph URI-path tests

• Formats database URI-path graph tests.

tests/test_graph_triage_db_uri_paths.py

test_hold_ui.pyFormat hold UI tests +5/-5

Format hold UI tests

• Applies Ruff formatting to hold UI assertions.

tests/test_hold_ui.py

test_index_mutation_admission.pyFormat mutation admission tests +115/-34

Format mutation admission tests

• Formats index mutation admission fixtures and assertions.

tests/test_index_mutation_admission.py

test_index_mutation_applicability.pyFormat mutation applicability tests +61/-17

Format mutation applicability tests

• Formats index mutation applicability cases.

tests/test_index_mutation_applicability.py

test_install_hooks.pyFormat hook installation tests +45/-16

Format hook installation tests

• Formats installation fixtures and assertions.

tests/test_install_hooks.py

test_issue46_finding_evidence.pyFormat finding-evidence tests +144/-48

Format finding-evidence tests

• Formats evidence fixtures and assertions.

tests/test_issue46_finding_evidence.py

test_l1_root_finding.pyFormat L1 root-finding tests +118/-37

Format L1 root-finding tests

• Formats root-finding fixtures and assertions.

tests/test_l1_root_finding.py

test_l2_infra_credit.pyFormat L2 infrastructure tests +31/-9

Format L2 infrastructure tests

• Formats infrastructure-credit assertions.

tests/test_l2_infra_credit.py

test_launcher_source_loading.pyClean launcher loading tests +3/-1

Clean launcher loading tests

• Resolves lint findings in launcher source-loading tests.

tests/test_launcher_source_loading.py

test_ledger_jsonl.pyFormat JSONL ledger tests +21/-5

Format JSONL ledger tests

• Formats JSONL ledger fixtures and assertions.

tests/test_ledger_jsonl.py

test_ledger_tail_boundaries.pyFormat ledger-tail tests +290/-100

Format ledger-tail tests

• Formats ledger boundary tests and documents worker-exception propagation.

tests/test_ledger_tail_boundaries.py

test_lens_attribution.pyClean lens attribution tests +2/-3

Clean lens attribution tests

• Resolves Ruff findings in lens attribution tests.

tests/test_lens_attribution.py

test_lens_packaging.pyClean lens packaging tests +5/-1

Clean lens packaging tests

• Resolves Ruff findings in packaging tests.

tests/test_lens_packaging.py

test_lens_wiring_ast.pyClean lens AST tests +1/-5

Clean lens AST tests

• Resolves lint findings in lens wiring assertions.

tests/test_lens_wiring_ast.py

test_lint_changed.pyTest full-tree lint selection +31/-4

Test full-tree lint selection

• Covers --all selection, mode exclusivity, both Ruff commands, and the updated workflow invocation.

tests/test_lint_changed.py

test_lock.pyFormat lock tests +2/-2

Format lock tests

• Applies Ruff formatting to locking assertions.

tests/test_lock.py

test_machine_l2.pyFormat L2 machine tests +14/-5

Format L2 machine tests

• Formats machine-state fixtures and assertions.

tests/test_machine_l2.py

test_machine_local.pyClarify local machine fixtures +4/-4

Clarify local machine fixtures

• Formats local machine tests and identifies pass_name as a review-pass identifier.

tests/test_machine_local.py

test_mcp_idle_watchdog.pyClarify watchdog log ownership +23/-5

Clarify watchdog log ownership

• Formats watchdog tests and notes that child processes own opened log handles.

tests/test_mcp_idle_watchdog.py

test_mcp_jobs.pyFormat MCP job tests +8/-6

Format MCP job tests

• Applies Ruff formatting to MCP job assertions.

tests/test_mcp_jobs.py

test_mcp_log_io.pyFormat MCP log I/O tests +22/-9

Format MCP log I/O tests

• Formats MCP logging fixtures and assertions.

tests/test_mcp_log_io.py

test_mcp_sarif_results.pyFormat MCP SARIF tests +161/-63

Format MCP SARIF tests

• Formats SARIF result fixtures and assertions.

tests/test_mcp_sarif_results.py

test_mcp_server.pyFormat MCP server tests +55/-22

Format MCP server tests

• Formats MCP server fixtures and assertions.

tests/test_mcp_server.py

test_mcp_source_drift.pyFormat MCP source-drift tests +48/-12

Format MCP source-drift tests

• Formats source-drift fixtures and assertions.

tests/test_mcp_source_drift.py

test_mcp_timeout.pyFormat MCP timeout tests +145/-52

Format MCP timeout tests

• Formats timeout fixtures and assertions.

tests/test_mcp_timeout.py

test_mutation.pyClean mutation tests +6/-4

Clean mutation tests

• Formats mutation assertions and clears lint findings.

tests/test_mutation.py

test_mutation_authority_refusals.pyFormat mutation authority tests +80/-22

Format mutation authority tests

• Formats refusal fixtures and assertions.

tests/test_mutation_authority_refusals.py

test_mutation_cancellation.pyFormat mutation cancellation tests +221/-61

Format mutation cancellation tests

• Formats cancellation fixtures and assertions.

tests/test_mutation_cancellation.py

test_mutation_diagnostics.pyClean mutation diagnostic tests +3/-9

Clean mutation diagnostic tests

• Resolves lint findings in mutation diagnostics.

tests/test_mutation_diagnostics.py

test_mutation_external_cwd.pyClean external-CWD tests +1/-3

Clean external-CWD tests

• Resolves lint findings in mutation working-directory tests.

tests/test_mutation_external_cwd.py

test_mutation_ledger_ci_controls.pyFormat mutation ledger CI tests +1013/-369

Format mutation ledger CI tests

• Applies Ruff formatting across ledger CI-control fixtures and assertions.

tests/test_mutation_ledger_ci_controls.py

test_mutation_ledger_consumers.pyFormat ledger consumer tests +184/-65

Format ledger consumer tests

• Formats mutation ledger consumer fixtures and assertions.

tests/test_mutation_ledger_consumers.py

test_mutation_ledger_disposition.pyFormat ledger disposition tests +130/-49

Format ledger disposition tests

• Formats mutation disposition fixtures and assertions.

tests/test_mutation_ledger_disposition.py

test_mutation_ledger_sibling_controls.pyFormat sibling-control tests +49/-17

Format sibling-control tests

• Formats sibling-control fixtures and assertions.

tests/test_mutation_ledger_sibling_controls.py

test_mutation_ledger_transport.pyFormat ledger transport tests +228/-84

Format ledger transport tests

• Formats mutation transport fixtures and assertions.

tests/test_mutation_ledger_transport.py

test_mutation_patchcorpus.pyClean patch-corpus tests +3/-1

Clean patch-corpus tests

• Resolves Ruff findings in mutation patch-corpus tests.

tests/test_mutation_patchcorpus.py

test_mutation_process.pyFormat mutation process tests +115/-30

Format mutation process tests

• Formats process fixtures and assertions.

tests/test_mutation_process.py

test_mutation_recorded_timeouts.pyFormat recorded-timeout tests +79/-22

Format recorded-timeout tests

• Formats mutation timeout fixtures and assertions.

tests/test_mutation_recorded_timeouts.py

test_mutation_result_integrity.pyClean mutation integrity tests +1/-0

Clean mutation integrity tests

• Resolves a lint finding in result-integrity tests.

tests/test_mutation_result_integrity.py

test_mutation_source_endpoints.pyFormat mutation endpoint tests +133/-51

Format mutation endpoint tests

• Formats source-endpoint fixtures and assertions.

tests/test_mutation_source_endpoints.py

test_mutation_source_selection.pyFormat source-selection tests +25/-9

Format source-selection tests

• Formats mutation source-selection fixtures.

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