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Debug - #12

Merged

adamfreedman merged 7 commits into

mainfrom

Aug 17, 2026

Merged

Debug#12
adamfreedman merged 7 commits into
mainfrom
debug

Commits on Aug 4, 2026
- Fix OOM failures and data-driven errors in multi-dataset runs
  
  adamfreedman
  and
  claude
  committed
  6500511
Commits on Aug 7, 2026
- Harden downsample_clusters, right-size memory, and improve scalability
  
  adamfreedman
  and
  claude
  committed
  cf69852
Commits on Aug 10, 2026
- Add low-quality-sample quarantine and config-driven excluded_samples
  
  adamfreedman
  and
  claude
  committed
  abe0cf1
Commits on Aug 12, 2026
- Move execution policy to profile and quarantine to Snakefile handlers
  
  adamfreedman
  and
  claude
  committed
  932e42b
Commits on Aug 13, 2026
- Give the runner job a correct pass/fail state via a post-run verification
  
  adamfreedman
  and
  claude
  committed
  31ed672
Commits on Aug 14, 2026
- Fix CI: move finalize function to common.smk and gate it to SLURM runs
  
  adamfreedman
  and
  claude
  committed
  a0a9b64
Commits on Aug 16, 2026
- Preserve cell metadata in posthocfilter memory strip (fix full-workflow CI)
  
  adamfreedman
  and
  claude
  committed
  b65102a