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Merged
MaximilianStammnitz merged 1 commit into from
Oct 30, 2026
Merged

Container metadata, conda lock files and container configs for all local modules #97

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26 changes: 26 additions & 0 deletions conf/containers_conda_lock_files_amd64.config
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process { withName: 'COUNTS_TO_FITNESS' { conda = 'modules/local/fitness/counts_to_fitness/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'DMSANALYSIS_AASEQ' { conda = 'modules/local/dmsanalysis/aa_seq/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'DMSANALYSIS_ERROR_CORRECTION_FALSE_DOUBLES' { conda = 'modules/local/dmsanalysis/error_correction_false_doubles/.conda-lock/linux_amd64-bd-801bac9c074a1f9b_1.txt' } }
process { withName: 'DMSANALYSIS_ERROR_CORRECTION_WILDTYPE' { conda = 'modules/local/dmsanalysis/error_correction_wildtype/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'DMSANALYSIS_POSSIBLE_MUTATIONS' { conda = 'modules/local/dmsanalysis/possible_mutations/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'DMSANALYSIS_PROCESS_VARIANT_COUNTS' { conda = 'modules/local/dmsanalysis/process_variant_counts/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'EXPDESIGN_FITNESS' { conda = 'modules/local/fitness/fitness_experimental_design/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'FASTQC' { conda = 'modules/nf-core/fastqc/.conda-lock/linux_amd64-bd-b342db7b694c9af4_1.txt' } }
process { withName: 'FASTQ_CHECK' { conda = 'modules/local/fastq_check/.conda-lock/linux_amd64-bd-b3082ff93d0ccff0_1.txt' } }
process { withName: 'FIND_SYNONYMOUS_MUTATION' { conda = 'modules/local/fitness/find_synonymous_mutation/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'FITNESS_CALCULATION' { conda = 'modules/local/fitness/fitness_calculation/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'FITNESS_HEATMAP' { conda = 'modules/local/fitness/fitness_heatmap/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'FITNESS_QC' { conda = 'modules/local/fitness/fitness_QC/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'MERGE_ALIGN' { conda = 'modules/local/bamprocessing/merge_align/.conda-lock/linux_amd64-bd-68780a2d1eaef64d_1.txt' } }
process { withName: 'MERGE_COUNTS' { conda = 'modules/local/fitness/merge_counts/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'MULTIQC' { conda = 'modules/nf-core/multiqc/.conda-lock/linux_amd64-bd-c17fb751507e9dfc_1.txt' } }
process { withName: 'RUN_DIMSUM' { conda = 'modules/local/fitness/run_dimsum/.conda-lock/linux_amd64-bd-833765ab7b2cf9aa_1.txt' } }
process { withName: 'RUN_MUTSCAN' { conda = 'modules/local/fitness/run_mutscan/.conda-lock/linux_amd64-bd-c5cefc95c9f1002e_1.txt' } }
process { withName: 'VARIANTCOUNTING' { conda = 'modules/local/variantcounting/.conda-lock/linux_amd64-bd-f223db6b9aa476d1_1.txt' } }
process { withName: 'VARIANT_EFFECT_INSPECTION_TOOL' { conda = 'modules/local/structure/variant_effect_inspection_tool/.conda-lock/linux_amd64-bd-cfb38dbf0574e16d_1.txt' } }
process { withName: 'VISUALIZATION_COUNTS_HEATMAP' { conda = 'modules/local/visualization/counts_heatmap/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'VISUALIZATION_COUNTS_PER_COV' { conda = 'modules/local/visualization/counts_per_cov/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'VISUALIZATION_ERROR_CORRECTION_REPORT' { conda = 'modules/local/visualization/error_correction_report/.conda-lock/linux_amd64-bd-cfb38dbf0574e16d_1.txt' } }
process { withName: 'VISUALIZATION_GLOBAL_POS_BIASES_COUNTS' { conda = 'modules/local/visualization/global_pos_biases_counts/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'VISUALIZATION_GLOBAL_POS_BIASES_COV' { conda = 'modules/local/visualization/global_pos_biases_cov/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'VISUALIZATION_LOGDIFF' { conda = 'modules/local/visualization/logdiff/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'VISUALIZATION_SEQDEPTH' { conda = 'modules/local/visualization/seqdepth/.conda-lock/linux_amd64-bd-32f1af0a83a018e7_1.txt' } }
process { withName: 'VISUALIZATION_SUMMARY_REPORT' { conda = 'modules/local/visualization/summary_report/.conda-lock/linux_amd64-bd-cfb38dbf0574e16d_1.txt' } }
25 changes: 25 additions & 0 deletions conf/containers_conda_lock_files_arm64.config
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process { withName: 'COUNTS_TO_FITNESS' { conda = 'modules/local/fitness/counts_to_fitness/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'DMSANALYSIS_AASEQ' { conda = 'modules/local/dmsanalysis/aa_seq/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'DMSANALYSIS_ERROR_CORRECTION_FALSE_DOUBLES' { conda = 'modules/local/dmsanalysis/error_correction_false_doubles/.conda-lock/linux_arm64-bd-fbcc673012c62cb0_1.txt' } }
process { withName: 'DMSANALYSIS_ERROR_CORRECTION_WILDTYPE' { conda = 'modules/local/dmsanalysis/error_correction_wildtype/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'DMSANALYSIS_POSSIBLE_MUTATIONS' { conda = 'modules/local/dmsanalysis/possible_mutations/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'DMSANALYSIS_PROCESS_VARIANT_COUNTS' { conda = 'modules/local/dmsanalysis/process_variant_counts/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'EXPDESIGN_FITNESS' { conda = 'modules/local/fitness/fitness_experimental_design/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'FASTQC' { conda = 'modules/nf-core/fastqc/.conda-lock/linux_arm64-bd-7c8a53b986d9a000_1.txt' } }
process { withName: 'FASTQ_CHECK' { conda = 'modules/local/fastq_check/.conda-lock/linux_arm64-bd-41c3b62452310f82_1.txt' } }
process { withName: 'FIND_SYNONYMOUS_MUTATION' { conda = 'modules/local/fitness/find_synonymous_mutation/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'FITNESS_CALCULATION' { conda = 'modules/local/fitness/fitness_calculation/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'FITNESS_HEATMAP' { conda = 'modules/local/fitness/fitness_heatmap/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'FITNESS_QC' { conda = 'modules/local/fitness/fitness_QC/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'MERGE_ALIGN' { conda = 'modules/local/bamprocessing/merge_align/.conda-lock/linux_arm64-bd-7b395b04348e2784_1.txt' } }
process { withName: 'MERGE_COUNTS' { conda = 'modules/local/fitness/merge_counts/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'MULTIQC' { conda = 'modules/nf-core/multiqc/.conda-lock/linux_arm64-bd-5c84a5000a226ab5_1.txt' } }
process { withName: 'RUN_DIMSUM' { conda = 'modules/local/fitness/run_dimsum/.conda-lock/linux_arm64-bd-8a66e8e1354d6370_1.txt' } }
process { withName: 'VARIANTCOUNTING' { conda = 'modules/local/variantcounting/.conda-lock/linux_arm64-bd-4cc0c5d536e48053_1.txt' } }
process { withName: 'VARIANT_EFFECT_INSPECTION_TOOL' { conda = 'modules/local/structure/variant_effect_inspection_tool/.conda-lock/linux_arm64-bd-a15c6f547e2083b8_1.txt' } }
process { withName: 'VISUALIZATION_COUNTS_HEATMAP' { conda = 'modules/local/visualization/counts_heatmap/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'VISUALIZATION_COUNTS_PER_COV' { conda = 'modules/local/visualization/counts_per_cov/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'VISUALIZATION_ERROR_CORRECTION_REPORT' { conda = 'modules/local/visualization/error_correction_report/.conda-lock/linux_arm64-bd-a15c6f547e2083b8_1.txt' } }
process { withName: 'VISUALIZATION_GLOBAL_POS_BIASES_COUNTS' { conda = 'modules/local/visualization/global_pos_biases_counts/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'VISUALIZATION_GLOBAL_POS_BIASES_COV' { conda = 'modules/local/visualization/global_pos_biases_cov/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'VISUALIZATION_LOGDIFF' { conda = 'modules/local/visualization/logdiff/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'VISUALIZATION_SEQDEPTH' { conda = 'modules/local/visualization/seqdepth/.conda-lock/linux_arm64-bd-880bbdecb19543bb_1.txt' } }
process { withName: 'VISUALIZATION_SUMMARY_REPORT' { conda = 'modules/local/visualization/summary_report/.conda-lock/linux_arm64-bd-a15c6f547e2083b8_1.txt' } }
26 changes: 26 additions & 0 deletions conf/containers_docker_amd64.config
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process { withName: 'COUNTS_TO_FITNESS' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'DMSANALYSIS_AASEQ' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'DMSANALYSIS_ERROR_CORRECTION_FALSE_DOUBLES' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-stringr:801bac9c074a1f9b' } }
process { withName: 'DMSANALYSIS_ERROR_CORRECTION_WILDTYPE' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'DMSANALYSIS_POSSIBLE_MUTATIONS' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'DMSANALYSIS_PROCESS_VARIANT_COUNTS' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'EXPDESIGN_FITNESS' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'FASTQC' { container = 'community.wave.seqera.io/library/fastqc:0.13.0--b342db7b694c9af4' } }
process { withName: 'FASTQ_CHECK' { container = 'community.wave.seqera.io/library/fq:0.12.0--b3082ff93d0ccff0' } }
process { withName: 'FIND_SYNONYMOUS_MUTATION' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'FITNESS_CALCULATION' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'FITNESS_HEATMAP' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'FITNESS_QC' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'MERGE_ALIGN' { container = 'community.wave.seqera.io/library/bwa_samtools_vsearch:68780a2d1eaef64d' } }
process { withName: 'MERGE_COUNTS' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'MULTIQC' { container = 'community.wave.seqera.io/library/multiqc:1.35--c17fb751507e9dfc' } }
process { withName: 'RUN_DIMSUM' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-dimsum_r-base_r-data.table_pruned:cca13eed371a9d84' } }
process { withName: 'RUN_MUTSCAN' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_bioconductor-mutscan_r-base:c5cefc95c9f1002e' } }
process { withName: 'VARIANTCOUNTING' { container = 'community.wave.seqera.io/library/pysam_biopython_numpy_polars-lts-cpu_pruned:f223db6b9aa476d1' } }
process { withName: 'VARIANT_EFFECT_INSPECTION_TOOL' { container = 'community.wave.seqera.io/library/numpy_pandas_python:cfb38dbf0574e16d' } }
process { withName: 'VISUALIZATION_COUNTS_HEATMAP' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'VISUALIZATION_COUNTS_PER_COV' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'VISUALIZATION_ERROR_CORRECTION_REPORT' { container = 'community.wave.seqera.io/library/numpy_pandas_python:cfb38dbf0574e16d' } }
process { withName: 'VISUALIZATION_GLOBAL_POS_BIASES_COUNTS' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'VISUALIZATION_GLOBAL_POS_BIASES_COV' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'VISUALIZATION_LOGDIFF' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'VISUALIZATION_SEQDEPTH' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:32f1af0a83a018e7' } }
process { withName: 'VISUALIZATION_SUMMARY_REPORT' { container = 'community.wave.seqera.io/library/numpy_pandas_python:cfb38dbf0574e16d' } }
24 changes: 24 additions & 0 deletions conf/containers_docker_arm64.config
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process { withName: 'COUNTS_TO_FITNESS' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'DMSANALYSIS_AASEQ' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'DMSANALYSIS_ERROR_CORRECTION_FALSE_DOUBLES' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-stringr:fbcc673012c62cb0' } }
process { withName: 'DMSANALYSIS_ERROR_CORRECTION_WILDTYPE' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'DMSANALYSIS_POSSIBLE_MUTATIONS' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'DMSANALYSIS_PROCESS_VARIANT_COUNTS' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'EXPDESIGN_FITNESS' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'FASTQC' { container = 'community.wave.seqera.io/library/fastqc:0.13.0--7c8a53b986d9a000' } }
process { withName: 'FASTQ_CHECK' { container = 'community.wave.seqera.io/library/fq:0.12.0--41c3b62452310f82' } }
process { withName: 'FIND_SYNONYMOUS_MUTATION' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'FITNESS_CALCULATION' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'FITNESS_HEATMAP' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'FITNESS_QC' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'MERGE_ALIGN' { container = 'community.wave.seqera.io/library/bwa_samtools_vsearch:7b395b04348e2784' } }
process { withName: 'MERGE_COUNTS' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'MULTIQC' { container = 'community.wave.seqera.io/library/multiqc:1.35--5c84a5000a226ab5' } }
process { withName: 'VARIANTCOUNTING' { container = 'community.wave.seqera.io/library/pysam_biopython_numpy_polars-lts-cpu_pruned:4cc0c5d536e48053' } }
process { withName: 'VARIANT_EFFECT_INSPECTION_TOOL' { container = 'community.wave.seqera.io/library/numpy_pandas_python:a15c6f547e2083b8' } }
process { withName: 'VISUALIZATION_COUNTS_HEATMAP' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'VISUALIZATION_COUNTS_PER_COV' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'VISUALIZATION_ERROR_CORRECTION_REPORT' { container = 'community.wave.seqera.io/library/numpy_pandas_python:a15c6f547e2083b8' } }
process { withName: 'VISUALIZATION_GLOBAL_POS_BIASES_COUNTS' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'VISUALIZATION_GLOBAL_POS_BIASES_COV' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'VISUALIZATION_LOGDIFF' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'VISUALIZATION_SEQDEPTH' { container = 'community.wave.seqera.io/library/bioconductor-biostrings_r-base_r-dplyr_r-ggplot2_pruned:880bbdecb19543bb' } }
process { withName: 'VISUALIZATION_SUMMARY_REPORT' { container = 'community.wave.seqera.io/library/numpy_pandas_python:a15c6f547e2083b8' } }
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