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MSA result download repeatedly times out after job reaches complete

Status: Open.

#856 In sokrypton/ColabFold;

· pngu1 opened on Sep 23, 2026

ColabFold MSA Server Data Retention Question

Status: Open.

#855 In sokrypton/ColabFold;

· rano1256 opened on Sep 23, 2026

RosettaFold2 Notebook Crashing due to Import Error

Status: Open.

#850 In sokrypton/ColabFold;

· AndrewLutsky opened on Sep 2, 2026

mmseqs expandaln issues: Cannot close data file /path/to/output/res_exp.xy

Status: Open.

#847 In sokrypton/ColabFold;

· LouisaMe09 opened on Aug 17, 2026

Inconsistent results from colabfold_search public API: random query-only A3M files

Status: Open.

#845 In sokrypton/ColabFold;

· LouisaMe09 opened on Jul 29, 2026

"Timeout while submitting to MSA server" This has been going on for a day. How do I fix it?

Status: Open.

#843 In sokrypton/ColabFold;

· ruichaomao opened on Jul 9, 2026

Segmentation fault / MLIR optimization error on NVIDIA RTX 5090 (Blackwell) with LocalColabFold 1.6.1

Status: Open.

#841 In sokrypton/ColabFold;

· Karol007 opened on Jul 1, 2026

ConnectTimeoutError to api.colabfold.com when using Boltz --use_msa_server

Status: Open.

#839 In sokrypton/ColabFold;

· Kj-23 opened on Jun 30, 2026

Can not connect to the MSA server

Status: Open.

#838 In sokrypton/ColabFold;

· Jennyhu666 opened on Jun 30, 2026

Failed to mmap memory dataSize

Status: Open.

#837 In sokrypton/ColabFold;

· Little-Ghost opened on Jun 19, 2026

Outlook: Will local colabfold_batch running at multi-thread GPU mode be online soon?

Status: Open.

#834 In sokrypton/ColabFold;

· Triiumpher opened on Jun 15, 2026

issue about MSA server storage space

Status: Open.

#827 In sokrypton/ColabFold;

· ioj-91 opened on May 14, 2026