Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
Differential methylation: Easy, Fast, Identification and ANnoTation
DNA methylation analysis pipeline for reduced representation bissulfite sequencing data
Tracking the evolution of esophageal squamous cell carcinoma under dynamic immune selection by multi-omics sequencing
R package for DNA Methylation Analysis (and Gene Expression Integration) for Illumina Infinium Array and BS-Seq Data
Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins
Methurator is a Python package designed to estimate CpGs saturation for DNA methylation sequencing data.
Pipeline for differential DNA methylation analysis
Code for the crb2a multi omics manuscript
One-liner solution for RRBS processing
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