Repository navigation
Bound inferred support and community outcome causality (batch92) - #1749
realmarcin wants to merge 1 commit into
Conversation
realmarcin
left a comment
realmarcin
left a comment
There was a problem hiding this comment.
Source-based self-adversarial review at exact head ba6bdfb; not independent approval.
-
Retain the untyped association-only floral-fruity outcome. ROAV/VIP prioritization and temporal microbial associations do not demonstrate starter-member synthesis or fungal-bacterial causal exchange; no new node or arrow is warranted.
-
Qualify the existing support network as HYPOTHESIZED/PARTIAL, distinguish proposed methanogen hydrogen consumption from donor provision, and remove categorical SYNTROPHY without requiring obligacy.
-
Retain supported SCDY1 plant growth and its SUPPORT evidence; remove MUTUALISM because the cited evidence does not establish reciprocal benefit, and record the abstract-only access boundary.
-
Retain consortium glyphosate removal and compatibility, remove unsupported MUTUALISM and the unproven carbon-fate arrow.; Retain the 91.03% processed-sample TOC endpoint without MUTUALISM or treating it as measured mineralization or a closed carbon balance.
-
Fresh both-root baseline preceded source reading; all four whole records and five original nodes/one arrow accounted for. One record unchanged and three scoped repairs. No density-driven invented graph structure.
-
Pu'er remains an association-only community outcome. ROAV/VIP ranking, temporal metabolite correlations and broad-pile bacterial predictors do not establish member-specific production or cross-kingdom causal exchange. Its bytes, earlier removed succession node and cultivation fields remain untouched.
-
QY2 keeps the authors support hypothesis with PARTIAL evidence. The exact primary discussion treats methanogens as potential hydrogen consumers; neither the broad donor sentence nor absolute16S establishes exchange or product-removal feedback. Current SYNTROPHY does not require obligacy. No intrinsic-organism node or extra topology restored.
-
SCDY1 retains supported host growth without translating recoverability into reciprocal benefit or zero effect. No COMMENSALISM fallback, root-hair mediator arrow or previously removed nodes. The graph quote independently matches the official preprint API abstract; the accepted abstract corroborates the outcome but is not final formatted full text. No claim that unread controls are absent.
-
RH1 retains compatibility, glyphosate/TOC endpoints and prior single-strain comparison context. Aggregate benefit is not member fitness. Methods2.4 processed the TOC samples, and the balanced reaction is predicted; neither resolves empirical carbon fate. Removing the direct arrow does not deny biodegradation, mineralization as a possibility, or the measured91.03% endpoint.
-
QY2 and RH1 complete primary main bodies read; Pu'er main body read from existing primary extraction; SCDY1 abstract-only. No figure-pixel, raw-data or full supplement audit. Fresh source access and cache-only evidence explicitly differ. No access-control bypass, new wet-lab protocol, growth optimization, genetic design or paid Edison submission.
-
All existing discussions and curation events preserved semantically; three new append-only histories. All prior tracked history and decision files byte-identical. Non-graph raw blocks,457otherrecords and921caches unchanged; canonical participant assignments and measured legacy census unchanged.
-
Seven new regressions, four focused schema/strict/term/reference/snippet gates and three history validations. All56existingwarnings unchanged with zero structural defects. Deterministic HTML and exact description parsing are not browser screenshots; generated-model loader1703 remains outside certification.
-
All-state issue dedup and ignored-inclusive local search recorded, with explicit exclusions. Repairs1746/1747/1748 remain open until protected-main merge; no claim of independent approval or corpus completion. Prior unanswered/denied provider scopes are unchanged.
848 passed in 236.44s (0:03:56); seven new regressions. Four focused schema/strict/term/reference/snippet gates and three append-only history gates passed. All four full-record CLI and local snippet checks passed. Selected SCDY1 cache text can match literally without independent provenance. Its graph quote separately matches the fresh official abstract; Pu'er graph quotes match existing primary extraction. Two other main bodies are fresh. CLI Total checks counts issues, not executed checks; literal matching is not entailment.
Five nodes retained, one unsupported RH1 arrow removed. Pu'er unchanged; QY2, SCDY1 and RH1 repaired. Coverage284reviewed/128pending/48needs_research across460records. All56network warnings unchanged, zero structural defects; legacy community-level census unchanged.457otherrecordfiles and921caches preserved. Existing history and decision files unchanged.
Deterministic rendering and exact HTML-description parsing, not screenshots. Postcommit check-docs-current passed clean, SHA256 5195d3464e4531a8c192d34a4cd63296e647275ef2b0aca15bf398c7193c85bd. Decisions,41executed output records/digests and self-adversarial dispositions committed under reports/causal_graph_review for batch92. Two fresh main bodies, one existing primary main-body extraction, two SCDY1 abstract versions read. The selected cache is not independent verification. Full-corpus snippet audit is informational, not clean-corpus certification. Loader1703 remains outside certification.
No new topology or paid Edison run. No independent approval or corpus completion. Protected-main merge pending.
Network integrity findingsWarnings only — a member with no interaction yet, or a participant matched by ontology id rather than by name, or one on a community-level interaction that resolves to no member. Reported, but does not fail the build. The full report is attached to the workflow run as an artifact. |
ba6bdfb to
dab1897
Compare
realmarcin
left a comment
realmarcin
left a comment
There was a problem hiding this comment.
Self-adversarial governance integration review at exact head dab1897031854614d628e33fcd79d700918b2348. This is a COMMENT, not independent approval.
Integrated already-merged main PR #1730 (fe1752572a688051e8105e5b89d3099fe2202c63). Compared with prior reviewed head ba6bdfb3fa594cdf5469fc81c12ae2975bb3ce6e, exactly two files changed: scripts/.vendored_canon_ref and tests/test_id_label_empty_adapter.py. Each resulting tree differs from its old tree by the exact binary patch from main, and each batch-owned binary patch remains byte-identical (SHA-256 1132ae78f5a28819eba8293b9097a0c11e86d4bb802ab06c456d31a820217cf1). These invariants passed on all 74 published branches. Original heads are retained in local archive refs/archive/communitymech-pre-governance-20261007. No scientific record, source cache, history, decision ledger, schema, runtime code or generated page changed in this integration.
Adversarial inspection: the adapter regression still checks the empty sentinel and case-insensitive caching, now with an isolated fake oaklib module and a one-call selector assertion. No validation threshold or runtime behavior was relaxed. Fresh regressions at both stack ends: 337 passed in 214.19s (0:03:34); 917 passed in 402.58s (0:06:42). Docs-current and pinned vendored-sync passed at batches26/99. The 72 intermediate combinations were checked by tree/patch hashes, not independently retested. Historical source-review limitations and unresolved issues, including loader #1703 and cache #1091, remain applicable. This is not new paper review, independent approval, or a claim that those outstanding issues are fixed.
Digest-bound integration receipt/logs: /private/tmp/communitymech-governance-integration-20261007/receipt.json. Prior output/review records in reports/causal_graph_review/ remain unchanged. The prior lifecycle receipt is archived and will be updated only after all exact-head comments are verified.
Required CI and independent review must pass for the exact head and protected merge-queue candidate. No CI rerun, manual dispatch, fabricated status, admin merge or protection bypass. Dependents remain draft; move them before deleting a merged parent branch.
dab1897 to
84add08
Compare
realmarcin
left a comment
realmarcin
left a comment
There was a problem hiding this comment.
Exact-head self-adversarial restack review at 84add08c0e69e7512b6e90950897130ccfeb0b9d.
COMMENT, not independent approval.
The batch-owned binary patch remains byte-identical:
SHA-256 1132ae78f5a28819eba8293b9097a0c11e86d4bb802ab06c456d31a820217cf1.
Tree b725eb6091fec487c33444b6872911cdaf8c9a76 matches the independently computed clean merge.
Compared with historical tree 4025223c4de2d14bc4b4979cf27ef0ad7949bc26, only scripts/.vendored_canon_ref
changes, incorporating main PR #1834's pin 849f336e025510316a5f235eb0af8547b8bd50cc.
All curated records, source caches, review outputs, histories, regression tests, and rendered
pages remain unchanged. No new primary-source review or local scientific-test rerun is claimed.
This PR is now part of native stack #1973, rooted at #1363 on main. No protected merge
has occurred. Fresh eligible PR/merge-group CI remains mandatory. No rule bypass, fabricated
status, merge into a topic parent, or premature branch deletion.
84add08 to
72e0cca
Compare
|
Superseded by the protected cumulative merge #1975 at Patch-inclusion receipt. Existing issue-closing links were transferred to #1975; unresolved research and non-graph gaps are not closed by this action. This PR is being closed as superseded, not represented as individually merged. Archival provenance tags retain source commits; cleanup removes branch refs only and preserves worktree files. |
1 participant
Scope
Closes #1746.
Closes #1747.
Closes #1748.
Adversarial Review
Verification And Output Records
848 passed in 236.44s (0:03:56); seven new regressions. Four focused schema/strict/term/reference/snippet gates and three append-only history gates passed. All four full-record CLI and local snippet checks passed. Selected SCDY1 cache text can match literally without independent provenance. Its graph quote separately matches the fresh official abstract; Pu'er graph quotes match existing primary extraction. Two other main bodies are fresh. CLI Total checks counts issues, not executed checks; literal matching is not entailment.
Five nodes retained, one unsupported RH1 arrow removed. Pu'er unchanged; QY2, SCDY1 and RH1 repaired. Coverage284reviewed/128pending/48needs_research across460records. All56network warnings unchanged, zero structural defects; legacy community-level census unchanged.457otherrecordfiles and921caches preserved. Existing history and decision files unchanged.
Deterministic rendering and exact HTML-description parsing, not screenshots. Postcommit check-docs-current passed clean, SHA256 5195d3464e4531a8c192d34a4cd63296e647275ef2b0aca15bf398c7193c85bd. Decisions,41executed output records/digests and self-adversarial dispositions committed under reports/causal_graph_review for batch92. Two fresh main bodies, one existing primary main-body extraction, two SCDY1 abstract versions read. The selected cache is not independent verification. Full-corpus snippet audit is informational, not clean-corpus certification. Loader1703 remains outside certification.
No new topology or paid Edison run. No independent approval or corpus completion. Protected-main merge pending.
Source Limits
Dependency
Draft depends on #1745. Do not merge into the topic parent. Require exact-head CI and protected-main queue after parent merge. Move dependents before deleting parent branches.